Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 599 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 483 / 5e-163 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G08680 299 / 5e-93 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 254 / 4e-76 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 246 / 8e-73 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 244 / 3e-72 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24660 242 / 3e-71 TMKL1 transmembrane kinase-like 1 (.1) AT1G64210 238 / 1e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 237 / 2e-69 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 229 / 6e-67 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022679 [exp] 654 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 650 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 646 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 629 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10034446 [exp] 306 / 8e-96 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 306 / 9e-96 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 305 / 6e-95 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 292 / 2e-90 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 291 / 1e-89 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 683 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 657 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 621 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 317 / 7e-100 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 311 / 8e-98 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 301 / 1e-93 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 293 / 2e-90 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 283 / 7e-87 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 279 / 1e-85 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 254 / 2e-75 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10012225 pacid=23172662 polypeptide=Lus10012225 locus=Lus10012225.g ID=Lus10012225.BGIv1.0 annot-version=v1.0 ATGAACTTGAGCCACAATTCTTTAACTGGAACCGTCCCAGTTAGTTTCTTCTCTCTTTCAACTTCTTCTCTGGTTTTCCTAGCTCTTGAGCATAACAATC TCTCTGGTTCTATCCCAGCTAGTTTAAGCAAGCTAGGGTTGATTCAGGAGATCACTCTTGATCATAATCGGATTACCGGAGCGATACCGGATGAACTCGG AAGGTTGTCGAATCTCCACAAGCTAGATCTTTCCTACAATGCTATCAATGGAACCATCCCTTCAAGCTTTGCCAATCTATCCTCTCTAGTCTCGTTGAAC CTGAAAAACAACAACTTCCAGGGCACCATTCCACCTTTTATAGCGAACATATCCACACTTAACGAACTCGATCTGTCTCGAAACGACTTGAGTGGAGAAA TTCCTTCTTCCTTTTCTCATCTAGCCTATCTCAACGTTTCCTACAACAATCTATCCGGCACCGTTCCGTCCCTTCTGGTCAAGAAGTTCAATGCGACATC TTTCGTCGGAAATCTTCAACTATGTGGCTATAGTCCATCAACACCTTGTCCTTCATCCTCACCCATCACTCTTCCATCCCCACCACCATCGTCGAATCCA TCGATAACTCACCATGCTCGCCGCAAGCTTAGCATTAGAGACCTTATCCTCATCATATCAGGATCAGTGGTGGCTTTCCTACTTCTACTATGCTGCTGTC TAGTCTGCTGTTTGACGATGAAAGGCAATGGTGGATCGAAGCAAAAGAACGGTAAAATCACAGCCTCTGGAAAAGGATATAAGCCATCTGTTGATTCCAA ACACGACATTGAATCGGGGAGCGAGATGGGAGGCAAATTGGTACATTTCGATGGGCCATTCATCTTCACAGCGGACGATTTGCTCTGTGCAACTGCTGAG ATCATGGGGAAGAGCGCGTACGGAACTGCATACAAAGCAACATTGGAAGACGGCAATCAAATCGCAGTTAAGAGATTGAGAGAGAAGTCAACAAAAGGTC GTAGAGAATTCGAAGTCGAAGCTGCTTCGATCGGGAAGATTCGTCACCCCAATCTGCTACCTCTAAGAGCTTATTACATTGGTCCTAAAGGAGAAAAGCT TCTGGCATTCGATTACTTGACTAGAGGGAGCCTCTCATCCTACCTCCATGCTCGTGGACCAGAGACGATCATCGACTGGCCAACAAGGATGAACATAGCA ATGGGGATCGCACGAGGTCTGAACCATCTCCACACAAAGGAAAACATAATCCACGGAAATCTCACCTCAAGCAACGTGCTCCTCGACGAGAAGACGAACG CACACATCGCCGACTTCGGGATCCCACGGCTGATGACAGACGCCGCCGCCGCGACAAACGTGATTTCCACCGCAGGAACACTAGGTTACCGAGCGCCCGA GCTCTCAACGAAGGTGAAAAACGCCGCCGGCACGAAGAGTGACATTTACAGCCTGGGAGTGATCATTCTGGAGCTGCTGACGGGGAAATCCCCCGGGGAG ACGAACAACGGGATGGCTCTGCCGCAGTGGGTGGCTTCGATCGTGAAGGAGGAGTGGACGAATGAAGTTTTCGATTTGGAGATATCCAAGGACTCGTCGA CAGCTACTGGCGATGAGCTCCTGAACGCTCTTAAGCTGGCTTTGCATTGCGTTGATCCGAAGCCATCGGCGAGGCCGGAAGCTGGGGAAGTTCTTCAGCA GCTGGAGGAGATCAAGCCGGAGCTGGCGACGGAAGGAAGTGTTGTCGTTCCAGCTGAATCAGATGACGGAATTAAAACCCCGCAAATGACGGATTAG
AA sequence Show only first row Show all	>Lus10012225 pacid=23172662 polypeptide=Lus10012225 locus=Lus10012225.g ID=Lus10012225.BGIv1.0 annot-version=v1.0 MNLSHNSLTGTVPVSFFSLSTSSLVFLALEHNNLSGSIPASLSKLGLIQEITLDHNRITGAIPDELGRLSNLHKLDLSYNAINGTIPSSFANLSSLVSLN LKNNNFQGTIPPFIANISTLNELDLSRNDLSGEIPSSFSHLAYLNVSYNNLSGTVPSLLVKKFNATSFVGNLQLCGYSPSTPCPSSSPITLPSPPPSSNP SITHHARRKLSIRDLILIISGSVVAFLLLLCCCLVCCLTMKGNGGSKQKNGKITASGKGYKPSVDSKHDIESGSEMGGKLVHFDGPFIFTADDLLCATAE IMGKSAYGTAYKATLEDGNQIAVKRLREKSTKGRREFEVEAASIGKIRHPNLLPLRAYYIGPKGEKLLAFDYLTRGSLSSYLHARGPETIIDWPTRMNIA MGIARGLNHLHTKENIIHGNLTSSNVLLDEKTNAHIADFGIPRLMTDAAAATNVISTAGTLGYRAPELSTKVKNAAGTKSDIYSLGVIILELLTGKSPGE TNNGMALPQWVASIVKEEWTNEVFDLEISKDSSTATGDELLNALKLALHCVDPKPSARPEAGEVLQQLEEIKPELATEGSVVVPAESDDGIKTPQMTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	2.0	0.9145
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	4.2	0.8823
AT5G26910			unknown protein		Lus10037725 [exp]	7.3	0.9263
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	12.4	0.8843
AT2G44640			unknown protein		Lus10043347 [exp]	12.7	0.8960
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	13.3	0.8839
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	14.7	0.8610
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	16.6	0.9063
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	17.0	0.9142
AT5G62170			unknown protein		Lus10027402 [exp]	18.4	0.8693

Compare expression of checked genes

Lus10012225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.