Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38330 564 / 0 MATE efflux family protein (.1) AT4G38380 372 / 3e-122 MATE efflux family protein (.1) AT1G51340 337 / 2e-109 MATE efflux family protein (.1.2) AT3G08040 317 / 1e-101 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 59 / 5e-09 MATE efflux family protein (.1.2) AT4G39030 56 / 4e-08 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002856 [exp] 427 / 9e-145 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10023943 [exp] 374 / 8e-123 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 333 / 1e-107 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10027367 [exp] 329 / 2e-104 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10029517 [exp] 323 / 2e-102 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10014440 [exp] 320 / 3e-102 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10016412 [exp] 319 / 4e-102 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 317 / 8e-102 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 315 / 6e-101 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126000 [exp] 593 / 0 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 404 / 2e-134 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 398 / 2e-132 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 397 / 1e-131 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G053700 [exp] 369 / 1e-121 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 345 / 6e-112 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 337 / 4e-109 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 333 / 4e-108 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 72 / 7e-13 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 69 / 3e-12 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10012227 pacid=23172669 polypeptide=Lus10012227 locus=Lus10012227.g ID=Lus10012227.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGTCGCTGCCGGTCTCTCTCACGAGCTCCTCCTCGGCGCCTGCTCGTTGCACGCTAAATCATCCCCGAAGTCTCGGATGATCTTTAGAA ACAATGTGAACTGCTCCCTCCGTTCGCTTACAATCCCGAAATCAAGATCCAAGAAGAATGCCTCCGCTCCGATTGAAGCTTCGTCAAAGCAACCGGAAGT TTCTCCTACTCCGGACTCTGATCAACGCGTCGAGAGCGAGGAATCGCCAGTTCCTCTTCTTCGCCGAGTCAGGGACGCAGTTAGGTTTAATGAGCTGGGT TTGGAGATTTTGTCGATTGCATTACCTGCAGCTTTGGCTCTTGCTGCTGATCCCATCACGTCTCTAGTCGATACAGCCTTTGTTGGTCACATCGGATCGG TTGAATTAGCGGCAGTTGGAGTATCAGTTTCTGTATTCAATCTAGTTTCGAAATTGTTCAATGTCCCTTTACTTAATATAACGACATCCTTCGTTGCGGA AGAACAAGCACTGCTGCTTGGCGCAAGGGATAGTACTAATTCTGCTGAAAGTAGTGATGGTTCAGATATTGAGCCTGTAGGACTTCCTTCCGTTTCCACT TCCTTGGCACTAGCTGCCATATTTGGCGTTGCAGAAGCTGTTGCACTTTATGTAGGCTCGGGATTCATAATGAATATCATGGGTATACCTGCTGGTTCAC CTATGCGAGCTCCAGCGGAGCAGTTTCTTTCACTGAGGGCAATTGGTGCTCCACCTATTGTGATTGCCCTTGCAGCACAAGGAGCTTTTCGTGGATTTAA AGATACAAAGACACCTCTATATGCCATTGGCAAGTATTATAACTTGTTCCTATGGTGTTTTTTAATCTTCTATCAGCAGCTTCGTTTGTATTGTTTTGGC AACTTGCTGAATGCAATCCTAGATCCAATCTTGATATTCGTTTTCAGTTTTGGTATTGGTGGAGCTGCAGTAGCTACAGTGATATCTGAGTATCTAATTG CTGTTATCCTTCTTTGGAAATTGAACGAGCAAGTGAAGCTGGTTTTCCCAGATATTGACGGAAGAAGGCTTTTGCGCTATCTGAATTCTGGTGGTCTTCT CATTGGCAGGACGATAGCAGTGCTTCTAACAATGACGCTTTCAACATCCTTAGCTGCTAGAGGCGGGCCCATACCTATGGCTGGTCATCAAATTTGTATG GAAGTTTGGTTAGCCGTATCTTTGCTCAATGATGCCTTAGCAATTGCTGGTCAGGCTCTGTTGGCCAGTAGCTATTCCGAAGGGCAGTTTGAACAAGCAC GTCAAGTCACCTACAAAGTGCTGCAGATTGGTTTGGTGACCGGAATTGGTTTGGGTGTGGTATTACTTCTTGGATTTGGAGCTTTTGCTAGCATATTCAC TACGGATACAGAAGTTCTGAAAATTGCTTGGTCTGGTGTTTGGTTCGTTGCTGGTTCACAGCCTGTGAATGCGATAGCTTTCGTTATTGACGGCCTCTAC TATGGAGTTTCGGATTTCGCCTATGCTGCCTATTCCATGGTGGTAGCTGGTCTTGTTTCGTCATTGTTCGTGCTCGTGGCAGCTCCTGTATATGGTCTTC CTGGCATCTGGGCAGGATTGTTCCTCTTCATGATCTTGCGTGTACTTGCTGGAATATGGAGGTTATCCGACAAAACCGGACCGTGGAAAGCTGTTTGGAC TCAAACCAAGCAAGGTGTTGAGTGA
AA sequence Show only first row Show all	>Lus10012227 pacid=23172669 polypeptide=Lus10012227 locus=Lus10012227.g ID=Lus10012227.BGIv1.0 annot-version=v1.0 MAAAVAAGLSHELLLGACSLHAKSSPKSRMIFRNNVNCSLRSLTIPKSRSKKNASAPIEASSKQPEVSPTPDSDQRVESEESPVPLLRRVRDAVRFNELG LEILSIALPAALALAADPITSLVDTAFVGHIGSVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQALLLGARDSTNSAESSDGSDIEPVGLPSVST SLALAAIFGVAEAVALYVGSGFIMNIMGIPAGSPMRAPAEQFLSLRAIGAPPIVIALAAQGAFRGFKDTKTPLYAIGKYYNLFLWCFLIFYQQLRLYCFG NLLNAILDPILIFVFSFGIGGAAVATVISEYLIAVILLWKLNEQVKLVFPDIDGRRLLRYLNSGGLLIGRTIAVLLTMTLSTSLAARGGPIPMAGHQICM EVWLAVSLLNDALAIAGQALLASSYSEGQFEQARQVTYKVLQIGLVTGIGLGVVLLLGFGAFASIFTTDTEVLKIAWSGVWFVAGSQPVNAIAFVIDGLY YGVSDFAYAAYSMVVAGLVSSLFVLVAAPVYGLPGIWAGLFLFMILRVLAGIWRLSDKTGPWKAVWTQTKQGVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	1.7	0.9534
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	3.2	0.9171
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	3.5	0.9335
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	3.5	0.9166
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	4.9	0.9323
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	6.6	0.9136
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	7.2	0.9034
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	7.3	0.8688
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	8.2	0.9024
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	10.0	0.9010

Compare expression of checked genes

Lus10012227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.