Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01630 71 / 3e-14 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1) AT4G00020 64 / 6e-12 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002857 [exp] 104 / 6e-26 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10000316 [exp] 95 / 7e-23 AT5G01630 540 / 0.0 BRCA2-like B (.1) Lus10017785 [exp] 0 / 1 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189600 [exp] 82 / 3e-18 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012228 pacid=23172664 polypeptide=Lus10012228 locus=Lus10012228.g ID=Lus10012228.BGIv1.0 annot-version=v1.0 ATGGACAAAGCAATCCAGAAAGCTCTGCAAGATGTTGGCTTAGAGAAGAGAGAGGTCTCTCCCTTTATGAGAGTTAGAGTGGTCAGTTTAAATACTGCCG GAGGAGGTAATCGGCGTCCGAAAGAAGGTTTGATAACAATATGGAATCCAACAGAGAAGCAGGCAAGCTATTTCATTTCTCATTTACTTGCAAGCAAGAG GATCCGGAAACAAATGGAAACCTTTGTCTCCCGCTCAGACCCAAAATTTCGAGATGGCTTTTGCAACATTATCAAGAGAAAGAAAGATAAGAGTAACCAG TTATGGGTAGCTGAAGCAACTGAAAACTCAACTTACTATCTTAACTTTGACTCCCCGAACTGCTCCCATCTCAGAAAGACTTGCCTCCTCCGTTCAAAGC TGGACCAAGACTTCTACCTCGGTATAATGCAACTATACTTGAATTTCTGCTCGTATCTTCGTCCCCCCATTATCGATCTAACCTCTGCAGTCATTACACT TCGTTTCTGCTTCGTGCAGGTTATCAGCAGCCTGAAGGAAAAGGTTCTGAAAATCGTCAACGGATCTACAAGCTAG
AA sequence Show only first row Show all	>Lus10012228 pacid=23172664 polypeptide=Lus10012228 locus=Lus10012228.g ID=Lus10012228.BGIv1.0 annot-version=v1.0 MDKAIQKALQDVGLEKREVSPFMRVRVVSLNTAGGGNRRPKEGLITIWNPTEKQASYFISHLLASKRIRKQMETFVSRSDPKFRDGFCNIIKRKKDKSNQ LWVAEATENSTYYLNFDSPNCSHLRKTCLLRSKLDQDFYLGIMQLYLNFCSYLRPPIIDLTSAVITLRFCFVQVISSLKEKVLKIVNGSTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	0	1
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	3.5	0.9486
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	6.3	0.8852
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10037483 [exp]	8.4	0.9318
					Lus10015828 [exp]	8.7	0.9388
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	9.7	0.9081
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	11.0	0.9368
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029576 [exp]	12.4	0.8059
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	13.3	0.7965
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	13.4	0.9332
AT3G08030			Protein of unknown function, D...		Lus10019727 [exp]	15.5	0.9055

Compare expression of checked genes

Lus10012228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.