Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01620 509 / 0 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 340 / 8e-116 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT1G73140 325 / 7e-110 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 318 / 6e-107 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 308 / 1e-102 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01360 285 / 1e-93 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 284 / 6e-93 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 276 / 1e-90 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 247 / 4e-79 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 204 / 1e-62 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002858 [exp] 635 / 0 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10022676 [exp] 353 / 8e-121 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10014238 [exp] 310 / 3e-104 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10040953 [exp] 308 / 1e-102 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 306 / 5e-102 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 286 / 3e-94 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 285 / 5e-94 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028141 [exp] 284 / 2e-93 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 274 / 2e-89 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125600 [exp] 555 / 0 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.016G125500 [exp] 333 / 4e-113 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.001G376700 [exp] 314 / 2e-105 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 313 / 8e-105 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G073300 [exp] 311 / 2e-104 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G119100 [exp] 285 / 6e-94 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187600 [exp] 276 / 6e-90 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 273 / 2e-89 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 271 / 1e-87 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 259 / 9e-84 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10012229 pacid=23172659 polypeptide=Lus10012229 locus=Lus10012229.g ID=Lus10012229.BGIv1.0 annot-version=v1.0 ATGTCTGATCAATTGGCTTGCCATAAGCATGGGAGGTCTGATTTGGGGTATCAGAAATGGAGATGGCAGCCAAGCGGCTGCAATTTGAAGAGATGGAATG CAGTGGAAATGTGGGAGAAATTGAGAGGGAAGAGGATGATGTTTGTAGGGGATTCGTTGAACAGAGGACAGTGGATATCAATGGTGTGTTTGTTGCAGTC GGTGATCCCAGCTGATCAGAGGTCCATCACTCCCAATGCTCAGCTAACTATCTTCAGAGCCGAGAACTACAATGCGACTGTGGAGTTTCTATGGGCGCCG CTGCTGGTGGATTCCAACTCGGACGACCCGGTGAATCACAGGCTAGGTGAGAAGATAATCCGTCCTGATTCGGTTGTAAAGCATTCGTCAAAGTGGGAGC AAGCGGATATACTCGTGTTCAACTCGTACCTGTGGTGGAGGATACCCCCCCTCAAGCTCTTATGGAGTGACGAGAAGGAGGGGTCCTGTGAAGAACTCGA CGGGTTACCAGCTATGGAGTTGTCGATGCAGACTTGGGCAGACAAGATCGCTTCCGAGCCGAAGTACCTTGACAAACGGGTCTTCTTTGTCACAATGTCA CCAACACATCTCTGGAGCAGAGAATGGCAGCCTGGAAGCGACGGAAACTGTTACAACGAGAAAGCTCCGATCGATCGGGAAGGCTACTGGGGAAGCGGTT CTGATTTACCGACGATGCGAATGGTGGACCGAGTTCTTGGCAAGCTGGGTTCAAGAGTTTCTGTTCTCAATATAACACAGCTGTCCGAGTATAGAAAGGA CGGGCACCCTTCGATATACCGCAAGTTTTGGGAGACGTTACGACCCGAACAGCTTGCGAATCCTCCGAGTTACTCTGACTGCATGCACTGGTGCCTCCCT GGGGTGCCTGATGTTTGGAATGAATTGCTCTTCCACCATTTGTAG
AA sequence Show only first row Show all	>Lus10012229 pacid=23172659 polypeptide=Lus10012229 locus=Lus10012229.g ID=Lus10012229.BGIv1.0 annot-version=v1.0 MSDQLACHKHGRSDLGYQKWRWQPSGCNLKRWNAVEMWEKLRGKRMMFVGDSLNRGQWISMVCLLQSVIPADQRSITPNAQLTIFRAENYNATVEFLWAP LLVDSNSDDPVNHRLGEKIIRPDSVVKHSSKWEQADILVFNSYLWWRIPPLKLLWSDEKEGSCEELDGLPAMELSMQTWADKIASEPKYLDKRVFFVTMS PTHLWSREWQPGSDGNCYNEKAPIDREGYWGSGSDLPTMRMVDRVLGKLGSRVSVLNITQLSEYRKDGHPSIYRKFWETLRPEQLANPPSYSDCMHWCLP GVPDVWNELLFHHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	0	1
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	1.0	0.8534
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	1.7	0.8301
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	4.0	0.8075
					Lus10035486 [exp]	6.3	0.8407
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	8.1	0.8179
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	10.2	0.8204
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	15.0	0.7715
AT3G48210			unknown protein		Lus10042089 [exp]	16.7	0.8150
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	17.7	0.8025
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	18.3	0.8191

Compare expression of checked genes

Lus10012229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.