Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43770 609 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 141 / 3e-39 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 128 / 5e-34 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 103 / 3e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 106 / 7e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 102 / 1e-23 transducin family protein / WD-40 repeat family protein (.1.2) AT5G23430 102 / 1e-23 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 100 / 3e-23 WD-40 repeat family protein / notchless protein, putative (.1) AT5G25150 100 / 4e-23 TAF5 TBP-associated factor 5 (.1) AT1G61210 99 / 2e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002860 [exp] 673 / 0 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003390 [exp] 257 / 2e-86 AT2G43770 236 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 133 / 6e-36 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 132 / 1e-35 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 124 / 9e-33 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 124 / 2e-32 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002211 [exp] 103 / 8e-28 AT2G43770 96 / 6e-26 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 112 / 3e-27 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001410 [exp] 112 / 6e-27 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G096900 [exp] 635 / 0 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G128001 [exp] 194 / 3e-62 AT2G43770 196 / 2e-63 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 144 / 4e-40 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 129 / 7e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 127 / 4e-34 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 110 / 7e-28 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 107 / 2e-25 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 103 / 3e-24 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G172800 [exp] 101 / 2e-23 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 100 / 3e-23 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10012230 pacid=23172687 polypeptide=Lus10012230 locus=Lus10012230.g ID=Lus10012230.BGIv1.0 annot-version=v1.0 ATGCCAGGTACAAACATGCAAGTAATTCCCAGCGAAAACCCTCTTTCAGTCTCTGGTCCAAGGCCAATGGAATGGTCAACGGTTCCTTACTCTGGACTAG GAGGAGCACCCGGTGGTGCTAACGGAAAAGGACGGACTTCAAGCTTGGACTCGCCGATAATGCTGCTCACTGGTCACCAAAGCGCCATCTACACCATGAA ATTCAACCCGGCTGGAAACATCATTGCATCCGGCTCACACGACAAGGAGATATTCCTGTGGTACATACACGACGAGTGCAAAAACTTCATGGTCTTAAAA GGGCACAAGAACGCAGTTCTCGATCTCCACTGGACATCCGATGGCTCGCAGATAATCTCCGCCAGCCCCGACAAAACCGTCAGAGCTTGGGACGTTGAGA CAGGGAAACAGATCAAGAAAATGGCGGAACACTCTTCCTTCGTGAACTCCTGCTGTTCTTCCCGACGAGGCCCTCCACTCGTCGTCAGTGGTTCCGACGA CGGGACAGCTAAGCTTTGGGACCTCCGACAGCGAGGAGCAATCCAAACCTTTCCGGACAAGTATCAAATTACGGCAGTAGCCTTCTCGGACGCTTCGGAC AAGATATTCACAGCCGGGATAGACAACGATGTGAAAGTATGGGACATTCGTAAAGCTGAAGTGACGATGAAGCTCGAGGGGCATCAGGATATGGTGACCG GAATGCAGCTGAGCCCTGACGGCTCGTATCTTCTGACAAATGGTATGGATTGCAAGCTGTGCGTATGGGATATGAGGCCTTACGCTCCGCAGAATCGGTG CGTGAAGGTTCTCGAAGGGCATCAGCATAATTTCGAGAAGAATCTGCTGAAGTGTAGCTGGTCTCCTGATGGGAGTAAGGTGAGTGCTGGTAGCTCGGAC CGGATGGTTTATATATGGGACACGACTTCGAGACGGATACTGTACAAGCTTCCGGGGCATACTGGGTCAGTTAACGAGTGTGTGTTTCACCCGAGTGAAC CGATCGTCGGGTCGTGTGGCAGTGACAAGCAGATTTACCTTGGGGAGATTTGA
AA sequence Show only first row Show all	>Lus10012230 pacid=23172687 polypeptide=Lus10012230 locus=Lus10012230.g ID=Lus10012230.BGIv1.0 annot-version=v1.0 MPGTNMQVIPSENPLSVSGPRPMEWSTVPYSGLGGAPGGANGKGRTSSLDSPIMLLTGHQSAIYTMKFNPAGNIIASGSHDKEIFLWYIHDECKNFMVLK GHKNAVLDLHWTSDGSQIISASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCSSRRGPPLVVSGSDDGTAKLWDLRQRGAIQTFPDKYQITAVAFSDASD KIFTAGIDNDVKVWDIRKAEVTMKLEGHQDMVTGMQLSPDGSYLLTNGMDCKLCVWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVSAGSSD RMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCGSDKQIYLGEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	0	1
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	1.7	0.9530
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	2.2	0.9436
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	3.5	0.9494
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	3.6	0.9337
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	4.0	0.9444
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	4.2	0.9525
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10014591 [exp]	4.7	0.9358
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	6.5	0.9113
AT2G40800			unknown protein		Lus10012858 [exp]	7.1	0.9374
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	7.5	0.9395

Compare expression of checked genes

Lus10012230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.