Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) AT5G01610 287 / 1e-100 Protein of unknown function, DUF538 (.1) AT5G37070 285 / 4e-100 Protein of unknown function, DUF538 (.1) AT2G03350 175 / 2e-56 Protein of unknown function, DUF538 (.1) AT5G16380 58 / 7e-11 Protein of unknown function, DUF538 (.1) AT3G07470 52 / 1e-08 Protein of unknown function, DUF538 (.1) AT3G07460 49 / 1e-07 Protein of unknown function, DUF538 (.1.2) AT5G19590 45 / 3e-06 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002862 [exp] 348 / 6e-125 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 300 / 2e-105 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 226 / 4e-77 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10030420 [exp] 170 / 2e-54 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10026639 [exp] 170 / 2e-54 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 147 / 2e-45 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 141 / 3e-43 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 66 / 7e-14 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 53 / 2e-08 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104000 [exp] 289 / 1e-101 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.016G125300 [exp] 286 / 3e-100 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.010G162400 [exp] 187 / 2e-61 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 180 / 2e-58 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.002G203400 [exp] 68 / 1e-14 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 67 / 2e-14 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 66 / 5e-14 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 54 / 1e-09 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 39 / 0.0004 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10012232 pacid=23172649 polypeptide=Lus10012232 locus=Lus10012232.g ID=Lus10012232.BGIv1.0 annot-version=v1.0 ATGGATCAAATATTCAACAAGGTCGGCTCCTACTGGTTCAACCAGAAGGCCAACAAGGAGATCAACTCCGTCGGCGACGACATCAACTCGTTATCGGACA GTATCGGAGGAGGAGCTAAATGGGTAGTCAACAAGATCAAAGGAAAAATGCAGAAGCCACTGCCGGACCTGCTAAAGGAGTACGACTTGCCAGTCGGGAT CTTTCCACGAGACGCCACAAACTACGAGTTCAACGAGGAGACGCACAAGCTAACTGTGTTCATCCCTCAGATATGTGACGTAGGGTACAAGGACTCGTCA GTGCTGCGTTTCAACACCCAGGTGACCGGATACCTGGAGAAAGGAAAGCTTACAGATGTCGAAGGGATGAAGACGAAGGTGATGATCTGGGTTAAGGTCA CTTCAATCACTTCTGAAGGATCGAAGGTGCATTTCACAGCAGGGATGAAGAAGAGCCGTAGCAGAGATGCTTACGAGGTTCTTAGAGACGGACTCCACGT CGAGAAGTTCTAA
AA sequence Show only first row Show all	>Lus10012232 pacid=23172649 polypeptide=Lus10012232 locus=Lus10012232.g ID=Lus10012232.BGIv1.0 annot-version=v1.0 MDQIFNKVGSYWFNQKANKEINSVGDDINSLSDSIGGGAKWVVNKIKGKMQKPLPDLLKEYDLPVGIFPRDATNYEFNEETHKLTVFIPQICDVGYKDSS VLRFNTQVTGYLEKGKLTDVEGMKTKVMIWVKVTSITSEGSKVHFTAGMKKSRSRDAYEVLRDGLHVEKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	0	1
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	1.0	0.9573
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	2.0	0.9300
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	2.2	0.9076
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	2.6	0.8959
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	3.0	0.9246
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	3.5	0.9196
AT1G36980			unknown protein		Lus10037355 [exp]	5.7	0.8957
AT1G31940			unknown protein		Lus10010425 [exp]	6.2	0.8658
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	7.7	0.8748
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	8.1	0.8463

Compare expression of checked genes

Lus10012232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.