Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01600 331 / 2e-115 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) AT2G40300 321 / 2e-111 ATFER4 ferritin 4 (.1) AT3G11050 312 / 6e-108 ATFER2 ferritin 2 (.1) AT3G56090 307 / 8e-106 ATFER3 ferritin 3 (.1) AT3G61010 102 / 1e-24 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002865 [exp] 452 / 5e-163 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10022673 [exp] 384 / 2e-136 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10012499 [exp] 383 / 6e-136 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10007523 [exp] 320 / 6e-111 AT2G40300 360 / 4e-127 ferritin 4 (.1) Lus10017433 [exp] 318 / 4e-110 AT2G40300 366 / 3e-129 ferritin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103900 [exp] 355 / 7e-125 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124700 [exp] 349 / 1e-122 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124900 [exp] 337 / 8e-118 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.008G072700 [exp] 324 / 2e-112 AT3G11050 330 / 9e-115 ferritin 2 (.1) Potri.010G184500 [exp] 320 / 1e-110 AT3G11050 311 / 2e-107 ferritin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00210 [flax] [poplar] Ferritin Ferritin-like domain
Representative CDS sequence Show only first row Show all	>Lus10012233 pacid=23172641 polypeptide=Lus10012233 locus=Lus10012233.g ID=Lus10012233.BGIv1.0 annot-version=v1.0 ATGTTTCTCAGAACTTCTCCTAGCTTCTCCATCACAGCCAAGCACGGCGACAGCTTGTTCGCCGGCCACGGCGGCTTCAGTGCTGCTGCGTCTCCGATTT CAGCTCAGGGAAGGGAGAGGAGGAGTAGCTCTCTGGTGGCTTCTGCTGCCGTTGGCGAAGTCAACTCAGCGTTGACTGGAATCGTGTTCAAGCCGTTCGA GGAAGTGAAGAGGGAAGAGTTTATGGTCCCGATCTCTCCACAGGTTTCGATCGCTCGTCAGCTGTACGTTGATGAGTGCGAATCTGCGATCAACGAGCAG ATCAATGTGGAGTACAACGCTTCGTACATATACCATTCGCTGTACGCGTACTTTGACAGGGACAACGTTGCTCTCAAAGGCTTCGCCAATTTTTTCAAGG AATCTAGTGAAGAAGAAAGGGGACATGCTGAAAAGCTGATGGAGTATCAGAATGTTCGTGGAGGGAGAGTGAAGCTACACTCTATTCTGATGCCTCCTTC TGAATTCGAGCATGTCGAGAAGGGAGATGCTTTGTACGCAATGGAACTCGCACTGTCCCTGGAGAAACTGGTGAATGAGAAGCTTCTGAGCTTGCACTCT GTGGCATCCAAGAACAACGACCCACAAATGGCTGAATTTGTCGAAAGAGAGTTTCTGAACGAACAGGTGGAAGCCATCAAGAAAATATCAGACTACGTCA CCCAGTTGAGGCTGGTTGGCAAAGGCCACGGAGTTTGGCACTTTGACCAGATGCTTCTCAACGAAGCTTGA
AA sequence Show only first row Show all	>Lus10012233 pacid=23172641 polypeptide=Lus10012233 locus=Lus10012233.g ID=Lus10012233.BGIv1.0 annot-version=v1.0 MFLRTSPSFSITAKHGDSLFAGHGGFSAAASPISAQGRERRSSSLVASAAVGEVNSALTGIVFKPFEEVKREEFMVPISPQVSIARQLYVDECESAINEQ INVEYNASYIYHSLYAYFDRDNVALKGFANFFKESSEEERGHAEKLMEYQNVRGGRVKLHSILMPPSEFEHVEKGDALYAMELALSLEKLVNEKLLSLHS VASKNNDPQMAEFVEREFLNEQVEAIKKISDYVTQLRLVGKGHGVWHFDQMLLNEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	0	1
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	2.4	0.8257
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	3.5	0.8457
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	4.9	0.8196
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	5.3	0.8160
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	6.6	0.7650
AT4G04614			unknown protein		Lus10006902 [exp]	6.9	0.7981
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	9.5	0.7946
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10035924 [exp]	11.4	0.8159
AT4G04614			unknown protein		Lus10014685 [exp]	12.0	0.7881
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	12.6	0.7670

Compare expression of checked genes

Lus10012233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.