Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002866 [exp] 111 / 4e-33 ND / Lus10041628 [exp] 40 / 3e-05 AT5G43150 52 / 3e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103800 [exp] 59 / 1e-12 ND / Potri.016G124300 [exp] 54 / 1e-10 ND / Potri.003G187500 [exp] 42 / 6e-06 AT5G43150 51 / 8e-10 unknown protein Potri.001G037400 [exp] 40 / 3e-05 AT5G43150 56 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012234 pacid=23172703 polypeptide=Lus10012234 locus=Lus10012234.g ID=Lus10012234.BGIv1.0 annot-version=v1.0 ATGAACACTCGTTGGAAGCAGAGGCTCCTCCTCTTGAAGCGCAACTCTTTCTCTTCCACCAAGCATGCGATCCTCAAGCTCACTTCCGCCGTCCGATCGC TCAAACCAAAACCCACCAGCCCCAGATCCACCAGAGGAAGGAAGCAACGAGGGGCGTTGGTGGCGCTACATAAGGATATGGAGTCATGTGGGGAGTATAC GGATATTCAGGTGATGTGGGAGATGCTGCATTCTGTTAATTGTTCGCCTGGACGACGTCGTGGCGGGAGCCGATCGTCGAGGAAGAAGGTTCCTGGTTGG AGATCTTGTTTGAGGCCTGTTTGTGTTTGA
AA sequence Show only first row Show all	>Lus10012234 pacid=23172703 polypeptide=Lus10012234 locus=Lus10012234.g ID=Lus10012234.BGIv1.0 annot-version=v1.0 MNTRWKQRLLLLKRNSFSSTKHAILKLTSAVRSLKPKPTSPRSTRGRKQRGALVALHKDMESCGEYTDIQVMWEMLHSVNCSPGRRRGGSRSSRKKVPGW RSCLRPVCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012234 [exp]	0	1
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	19.3	0.6474
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024753 [exp]	19.8	0.6623
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	33.1	0.6468
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	41.7	0.6085
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036861 [exp]	43.1	0.5867
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	72.2	0.6016
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	123.3	0.5547
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	138.8	0.5466
AT1G23790			Plant protein of unknown funct...		Lus10030870 [exp]	208.5	0.5065

Compare expression of checked genes

Lus10012234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.