Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1093 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 796 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 721 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 47 / 8e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002206 [exp] 1502 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 1060 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 875 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 874 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 758 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 223 / 3e-68 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 179 / 7e-48 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 144 / 2e-40 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 139 / 5e-39 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 1105 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1068 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 988 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 970 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 749 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 737 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.019G025600 [exp] 47 / 8e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 44 / 0.0004 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10012238 pacid=23172667 polypeptide=Lus10012238 locus=Lus10012238.g ID=Lus10012238.BGIv1.0 annot-version=v1.0 ATGGATTGTTGCGGGAGAAATATCGAATGCCCTAAGTCATGCTTGATTTCCGGTTACGATCCTGAATCTGCCAATGATCCTTGCAGCTGTCAATCACGAT CGGATTCCGATGATGTTGTTTTGATCAGAGATGAATGTTCGACTTCCTCCTACGACGAAGCGGATATTTCGTTCTGCATCGGCAAAGAAGAGATTCATTG CAATAGGTACAAGATCGCATCGATTTCCAGGCCGTTTAAGGCAATGCTGTACGGAGATTTCACGGAATCAAGAAGGGGGAAGATATACTTCTCCATGAAT TCTATATCCGCGGAAGGAATGAAGGCAGTAGAAAGTTTCAGCAGGACGAAGAAGTTAGCCATTGTTGATAATCTACCTTTACTTCTGGAGATTCTATCAT TCGCAAATCGATTCTGCTGCGACGAATTGAAAGCCACTTGCGATTCTCGATTGGCTTTCTTAGTCTTGGACATGGACGTAGCATTGTCGATTATCGACTA CGGATTGGAAGAGACAGCTTATCTTACAGTAGCAGCTTGTTTGCAGGTGTTTCTTCGAGAGCTTCCGAGCTCGATGAACCATCATTACATTAGAAAACTG TTCTGTACTTCAGAAGGTAAGGAAAGATTGAATCTTGCTGGACACGCTTCGTTTCTGCTGTATTACTTTCTGAGTCAGATTTCGATGGATGACGATATGA AATCGAACACTACGGTCATGCTACTAGAGCGGCTAGGAGAGTTTTCGGTCGAAGATTGGCAGAAGCGGATCGCTTATCATCAATTGGGAGTCGTGATGCT CGAGAGGAACGAGTTTAAAGACGCTCAGAAATGGTTTGATTCTGCGGTTGAGTCCGGTCATGTTTATTCTTCGGTAGGTTCGGCGAGGGCTAAGTACAAG CGTGGACATAAGTATCTAGCGTACAAGGCGATGAACTTGTTGATTAATTCGGATTCGGGTTACAAACCGGCCGGGTGGATGTATCAGGAGAGGGCAATGT ACTGCAGTAGGAAAGAGAAGCTGATCGATTTGGAAGTAGCGACAGAAATGGATCCCACTCTTACATTCCCTTACAAGTATAGAGCCGTCTCGTTGGTGGA AGGTGATAAACGGGAGGCTGCGATTTTGGAACTTGGGAAAGTGATTGGCTTTAAAGTGTCTACTGATTGCCTCGAGCTACGGGCTTGGACTTTGATCGGT TTGCGTGATTACGAAGGTGCTGTTAAGGATATCAGGGCGCTCTTGGCTTTGGAACCGAATTACTACACGGTGCATAACGGGAAAGTGAAAGGTGATCAGT TGCTGGAACTTCTTAGCCCTCTTGTTCATCAGTGGGATGATGCTGGTTGTTGGATGCAACTCTATGATCGATGGTCCGCTGTCGACGACATTGGATCGCT AGCTTTAGTACACAACATGTTGGCTTATGCTCCGGAGAAGAGCATCTATTGGTTCCGACAATCTCTTTTGCTCTTACGGTTGAATTATCATAAGGCTGCA ATGCGGAGTTTGAGGTTGGCTAGGAACTTTTCTCCTACGGAACACGAAAGACTTGTCTACGAAGGTTGGATTCTTTACGACACAGGCAATCGAGAAGAAG CGCTGGCGAAAGCTGAGAAGTCGGTTTCGATTCAAAGGTCGTTCGAAGCGTTTTTCCTGAAAGCGTATATATTAGCAGATTCGAATCCTTATCCCAACTC TTCAAGGAATGTTATTCAAATTCTGGAAGAAGCTCGAAGTTGCTGCCCGTCAGATAGTCTCCGTAAAGGACAGGCACTGAATAACCTAGGCAGTGTTTAT GTCGACTGCGGGAATCTAGACCGAGCTGCCGAATGCTACACCGAAGCCATCAACATCATGCACACGAGAGCTCACCAAGGTCTGGCGCGAGTTTATCATC TGAAAGACGATCGAAAAGCCGCATACGATGAGATGACGAAGCTGATCGAGAAAGCCGGGAACAATGCCTCGGCTTACGAGAAACGGTCCGAATATTGCGA TCAGGATATGGCAAAGAGCGATCTTTTCAAGGCGACGCTGCTTGATCCGTTGCGCACATATCCTTATCGATACAGGGCAGCCGTTCTGATGGATAACCAC AAGGAAGGTGAAGCAATAGCGGAGCTTACGAGGGCGATAGCGTTCAAGCCAGACTTGCAACTGTTGCATCTTCGAGCAGCTTTCTACGACTCGATGGGGG ATTTTGCCAACACTTTCCGGGACTGTCGAGCTGCATTGTGTCTAGATCCCGGCTACGGCGATGTGATGGAACTGTACAACAAAGCAGCCGCGAAAGCTTA A
AA sequence Show only first row Show all	>Lus10012238 pacid=23172667 polypeptide=Lus10012238 locus=Lus10012238.g ID=Lus10012238.BGIv1.0 annot-version=v1.0 MDCCGRNIECPKSCLISGYDPESANDPCSCQSRSDSDDVVLIRDECSTSSYDEADISFCIGKEEIHCNRYKIASISRPFKAMLYGDFTESRRGKIYFSMN SISAEGMKAVESFSRTKKLAIVDNLPLLLEILSFANRFCCDELKATCDSRLAFLVLDMDVALSIIDYGLEETAYLTVAACLQVFLRELPSSMNHHYIRKL FCTSEGKERLNLAGHASFLLYYFLSQISMDDDMKSNTTVMLLERLGEFSVEDWQKRIAYHQLGVVMLERNEFKDAQKWFDSAVESGHVYSSVGSARAKYK RGHKYLAYKAMNLLINSDSGYKPAGWMYQERAMYCSRKEKLIDLEVATEMDPTLTFPYKYRAVSLVEGDKREAAILELGKVIGFKVSTDCLELRAWTLIG LRDYEGAVKDIRALLALEPNYYTVHNGKVKGDQLLELLSPLVHQWDDAGCWMQLYDRWSAVDDIGSLALVHNMLAYAPEKSIYWFRQSLLLLRLNYHKAA MRSLRLARNFSPTEHERLVYEGWILYDTGNREEALAKAEKSVSIQRSFEAFFLKAYILADSNPYPNSSRNVIQILEEARSCCPSDSLRKGQALNNLGSVY VDCGNLDRAAECYTEAINIMHTRAHQGLARVYHLKDDRKAAYDEMTKLIEKAGNNASAYEKRSEYCDQDMAKSDLFKATLLDPLRTYPYRYRAAVLMDNH KEGEAIAELTRAIAFKPDLQLLHLRAAFYDSMGDFANTFRDCRAALCLDPGYGDVMELYNKAAAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012238 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	7.8	0.8728
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	23.7	0.8205
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	62.2	0.8298
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	76.3	0.8094
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10018179 [exp]	88.7	0.8118
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	105.8	0.8179
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10001514 [exp]	115.3	0.8077
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	121.8	0.8100

Compare expression of checked genes

Lus10012238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.