Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 456 / 8e-160 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT4G13510 45 / 4e-05 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24300 43 / 0.0002 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT1G64780 42 / 0.0003 ATAMT1;2 ammonium transporter 1;2 (.1) AT3G24290 41 / 0.0009 AMT1;5 ammonium transporter 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002208 [exp] 588 / 0 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 456 / 2e-159 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 380 / 7e-130 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 378 / 3e-129 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 378 / 3e-129 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 378 / 4e-129 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 376 / 1e-128 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 375 / 3e-128 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 357 / 2e-120 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102800 [exp] 526 / 0 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 522 / 0 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 466 / 1e-163 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 439 / 3e-153 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 431 / 1e-149 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 429 / 5e-149 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 379 / 7e-130 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 361 / 2e-122 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 352 / 6e-119 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 346 / 1e-116 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10012240 pacid=23172699 polypeptide=Lus10012240 locus=Lus10012240.g ID=Lus10012240.BGIv1.0 annot-version=v1.0 ATGAATCAGACTCGGATTCCGATCGCCTACGGCCAGGTCGATCCGGCGGTGCCGGACTGGCTAAACAAAGGAGACAACGCATGGCAGATGACGTCATCCA CCTTAGTGTCGATCCAGAGCATGCCCGGTCTAGTCGTCATCTACGCCAGCATCGTGAAGAAGAAATGGGCGGTCAACTCTGCTTTCATGGCGCTCTACGC CTTCGCCGCCGTCCTCATCTGCTGGGTTCTCTTGTGCTACCGCATGGCCTTCGGCGACGAGCTCTTACCGTTCTGGGGGAAAGGAGCTCCTGCTCTGGGG CAAAAGTATCTAATTCGCCGGGCGATCGTTCCAGCGAGCCCTCACCGTCAGGATGATGGGTCAGTCCACGTCATAGAGCCGTTTTATCCCATGGCTACTC TGGTTTATTTCCAGTTCACTTTTGCTGCGATTACTATGATTCTGCTGGCCGGATCTGTTTTGGGGAGGATGAATATTCGTGCTTGGATGGCGTTTGTTCC GCTGTGGCTTGTGTTTTCTTATACGGTGGGGGCGTTCAGTTTATGGGGAGGTGGATTTCTGTACCATTGGGGTGTTATTGATTACTCCGGCGGGTATGTG ATTCATCTCTCCTCGGGGATCGCCGGACTCACTGCGGCTTACTGGGTAGGGCCGAGGTTGAAGGTGGACAGGGAGAGGTTCCCGCCGAACAACGTGCTGC TGATGCTCGCCGGAGCGGGGCTGCTGTGGATGGGGTGGTCGGGGTTCAACGGAGGGGCGCCATACGCAGCCAATATAGATGCTTCGATTGCGATTCTGAA CACGAATATATGTGCCGCGACGAGCTTGCTGGTGTGGACGTCGCTGGATGTTGTGTTCTTCGGGAAGCCGTCGGTAATCGGAGCCGTGCAGGGAATGATG ACCGGACTCGTTTGCATTACTCCTGGTGCAGCTGAATTCCGGGATCAGAAGGGTCAATGGCAGTGCATCTCACGTAAAGAACGAATACAGATAGAGCCTG ATGGTAAAACAAGCAAAAGCACCAGAGGAAAAGCATAA
AA sequence Show only first row Show all	>Lus10012240 pacid=23172699 polypeptide=Lus10012240 locus=Lus10012240.g ID=Lus10012240.BGIv1.0 annot-version=v1.0 MNQTRIPIAYGQVDPAVPDWLNKGDNAWQMTSSTLVSIQSMPGLVVIYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGDELLPFWGKGAPALG QKYLIRRAIVPASPHRQDDGSVHVIEPFYPMATLVYFQFTFAAITMILLAGSVLGRMNIRAWMAFVPLWLVFSYTVGAFSLWGGGFLYHWGVIDYSGGYV IHLSSGIAGLTAAYWVGPRLKVDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDASIAILNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMM TGLVCITPGAAEFRDQKGQWQCISRKERIQIEPDGKTSKSTRGKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10012240 [exp]	0	1
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	6.2	0.7626
AT3G11810			unknown protein		Lus10030427 [exp]	25.3	0.7485
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10021024 [exp]	28.5	0.7451
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	58.6	0.6782
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	59.2	0.7113
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	63.7	0.7016
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	64.5	0.7101
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	88.8	0.6584
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	141.9	0.6540
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	200.0	0.6597

Compare expression of checked genes

Lus10012240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.