Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42960 111 / 2e-31 unknown protein AT5G16660 49 / 1e-07 unknown protein AT3G02900 47 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016034 [exp] 190 / 4e-62 AT1G42960 160 / 2e-50 unknown protein Lus10009524 [exp] 49 / 1e-07 AT3G02900 138 / 1e-41 unknown protein Lus10026866 [exp] 42 / 3e-05 AT5G16660 119 / 7e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254200 [exp] 114 / 1e-32 AT1G42960 141 / 5e-43 unknown protein Potri.007G064100 [exp] 107 / 8e-30 AT1G42960 147 / 1e-45 unknown protein Potri.013G078100 [exp] 53 / 5e-09 AT5G16660 134 / 1e-40 unknown protein Potri.019G041700 [exp] 52 / 1e-08 AT5G16660 134 / 9e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012242 pacid=23172655 polypeptide=Lus10012242 locus=Lus10012242.g ID=Lus10012242.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTGCAATCTCAAACTCCCTTGTTCTCTCCAGAAACCCTCAGCTCTCCAACCTCTCTTCCGGTGTTGGGCCTACTGTTTTGTCCTTCAACG AAACTCGTCCTCGGAGCCTCCGACTTGCTCAATCGAGAAGGTCGCTCGTCGTTCAAGCTGCCAGTGATGGCCATAAAGGATCAGGCAGTTCGGGAATCTT CATTGGTGGCTTTGTGTTGGGAGGACTGGTTGTTGGTGCACTTGGATGCGTCTTGGCACCTCAGATCAGCAAGGCATTAGCTGGGACTGACCGGAAGGAG CTAATGAGGAAACTCCCCAAGTTCATCTATGATGAGGAGAAGGCTTTAGAGAAAACACGAAAGATATTGACGGAGAAGATTGCGCAGTTGAACTCCGCCA TTGATGATGTGTCTGTACAGCTAAGAACAGATGGTGACGATTCTCCTCCTCCCAAGAGCAAGAAGAAGAGTGCCAACCCTGATGGAATCGAAGCTGCAAT TTGA
AA sequence Show only first row Show all	>Lus10012242 pacid=23172655 polypeptide=Lus10012242 locus=Lus10012242.g ID=Lus10012242.BGIv1.0 annot-version=v1.0 MSSSAISNSLVLSRNPQLSNLSSGVGPTVLSFNETRPRSLRLAQSRRSLVVQAASDGHKGSGSSGIFIGGFVLGGLVVGALGCVLAPQISKALAGTDRKE LMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSVQLRTDGDDSPPPKSKKKSANPDGIEAAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42960			unknown protein		Lus10012242 [exp]	0	1
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	2.0	0.9485
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	2.0	0.9395
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	9.4	0.9286
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	9.8	0.9341
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	11.0	0.9384
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	13.0	0.9238
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	15.4	0.9070
					Lus10023559 [exp]	15.5	0.9286
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	15.7	0.9329
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	18.2	0.9001

Compare expression of checked genes

Lus10012242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.