Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42970 706 / 0 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 493 / 6e-174 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 487 / 1e-171 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) AT1G79530 293 / 4e-95 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 291 / 2e-94 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT3G04120 256 / 8e-82 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 254 / 2e-81 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016033 [exp] 807 / 0 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10041502 [exp] 491 / 5e-173 AT1G12900 650 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10012591 [exp] 491 / 2e-172 AT1G12900 654 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10000872 [exp] 275 / 3e-88 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10009602 [exp] 274 / 1e-87 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10011375 [exp] 267 / 4e-86 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 267 / 4e-86 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 262 / 3e-84 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 261 / 7e-84 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254100 [exp] 711 / 0 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G007100 [exp] 672 / 0 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.014G140500 [exp] 466 / 2e-163 AT3G26650 622 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.002G220566 [exp] 464 / 8e-163 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.010G172400 [exp] 280 / 5e-90 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.012G094100 [exp] 272 / 3e-88 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G083900 [exp] 275 / 4e-88 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.001G335800 [exp] 263 / 1e-84 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 261 / 7e-84 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G055400 [exp] 254 / 2e-81 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0063 [flax] [poplar] PF02672 [flax] [poplar] CP12 CP12 domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012243 pacid=23172677 polypeptide=Lus10012243 locus=Lus10012243.g ID=Lus10012243.BGIv1.0 annot-version=v1.0 ATGGCAACCCAAGCTGCACTTGCTCCTTCAAGAGTTCCAGGCACCACCAGGCTCCTTTCTTCCAGCAGGATTACCCACTCTTTCCCTTCTCAATGCTCCT CTAAGAGGTTGGAAGTGGTCGAGTTCTCAGGGCTCCGTGTCAAGAGTGCCACTGATGGATCCTTATTCCACGCAGTTGCTCCCAGGGCTGCAGGATCTCC CCCTGCGAGGTTGGAGCCAGTTGCTAAGTTGAAGGTTGCAATTAATGGGTTCGGACGCATTGGTAGGAACTTCTTGCGATGCTGGCATGGTCGCAAAGAT TCTCCTCTGGAAGTTATTGTCGTCAACGACAGTGGTGGTGTTAGGAATGCTTCCCACTTGCTGAAGTATGACTCAATGCTCGGAACGTTCAAGGCCGATG TGAAAATCGTGGATGATGGCACCATCAGCGTTGATGGGAAGCTCATCAAAGTTGTCTCTAGCAGGGATCCCCTTAAGCTTCCATGGGCCGAGCTTGGAAT CGACATTGTCATTGAGGGAACAGGAGTGTTCGTGGACGGGCCTGGCGCTGGAAAGCACATTCAAGCCGGTGCGAAGAAGGTTATCATCACTGCTCCTGCT AAAGGTGCTGACATTCCCACATATGTCCTTGGTGTTAATGAAAAGGATTACGGCCATGATGTTGCCAACATTGTCAGCAATGCTTCTTGCACCACAAACT GTCTGGCTCCTTTCGTCAAAGTCATCGATGAGGAATTCGGCATTGTCAAGGGAACCATGACTACCACTCACTCCTACACCGGAGATCAGAGGTTGTTGGA TGCTTCGCACCGGGACCTGAGGAGAGCAAGGGCTGCAGCTCTGAACATAGTGCCAACTAGCACAGGTGCAGCAAAAGCCGTGTCACTAGTCCTGCCTCAG CTGAAGGGGAAACTCAACGGTATTGCTCTCCGTGTCCCCACACCCAACGTTTCGGTTGTGGACCTAGTCGTGAACGTTGCGAAGAAAGGGATCTCCGCCG AGGATGTCAATGCTGCCTTCAGGAAGGCAGCAGAAGGACCCCTGAAGGGAATACTGGATGTGTGTGATGCTCCTCTTGTGTCTGTGGATTTCAGGTGTAC CGATGTTTCGTCGACCATCGACTCCTCATTGACTATGGTTATGGGAGATGATATGGTGAAGGTTGTTGCCTGGTATGATAATGAATGGGGATACAGTCAA AGGGTGGTGGATTTGGCACATTTGGTGGCGAGCAAGTGGCCAGGAGTTGCTGGAGCAGGAAGTGGAGATCCTCTGGAAGACTTCTGTGAGACAAACCCTT CTGAAGAGGAATGCAAAGTTTATGAAGCTTAG
AA sequence Show only first row Show all	>Lus10012243 pacid=23172677 polypeptide=Lus10012243 locus=Lus10012243.g ID=Lus10012243.BGIv1.0 annot-version=v1.0 MATQAALAPSRVPGTTRLLSSSRITHSFPSQCSSKRLEVVEFSGLRVKSATDGSLFHAVAPRAAGSPPARLEPVAKLKVAINGFGRIGRNFLRCWHGRKD SPLEVIVVNDSGGVRNASHLLKYDSMLGTFKADVKIVDDGTISVDGKLIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA KGADIPTYVLGVNEKDYGHDVANIVSNASCTTNCLAPFVKVIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQ LKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDAPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQ RVVDLAHLVASKWPGVAGAGSGDPLEDFCETNPSEEECKVYEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	3.2	0.9447
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	3.3	0.9526
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	4.5	0.9380
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	4.7	0.9324
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	6.5	0.9424
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	6.9	0.9375
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	8.7	0.9254
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	9.2	0.9234
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	9.5	0.9130
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	10.0	0.9384

Compare expression of checked genes

Lus10012243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.