Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33700 493 / 3e-174 Protein phosphatase 2C family protein (.1) AT3G51470 422 / 7e-147 Protein phosphatase 2C family protein (.1) AT2G25620 298 / 1e-97 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 294 / 3e-96 Protein phosphatase 2C family protein (.1.2) AT1G48040 265 / 4e-85 Protein phosphatase 2C family protein (.1) AT3G17250 258 / 5e-82 Protein phosphatase 2C family protein (.1) AT5G10740 153 / 1e-42 Protein phosphatase 2C family protein (.1) AT5G24940 149 / 3e-40 Protein phosphatase 2C family protein (.1) AT1G43900 143 / 1e-38 Protein phosphatase 2C family protein (.1) AT4G31750 142 / 1e-38 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016030 [exp] 729 / 0 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 586 / 0 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 586 / 0 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 304 / 2e-100 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 302 / 2e-99 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10038058 [exp] 297 / 2e-97 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 293 / 9e-96 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10001682 [exp] 278 / 4e-90 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10017106 [exp] 268 / 5e-86 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253700 [exp] 538 / 0 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 503 / 2e-178 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 454 / 3e-159 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 447 / 1e-156 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 307 / 3e-101 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.018G033000 [exp] 291 / 3e-95 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 290 / 6e-95 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 288 / 4e-94 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 284 / 1e-92 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.002G190400 [exp] 283 / 3e-92 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10012244 pacid=23172674 polypeptide=Lus10012244 locus=Lus10012244.g ID=Lus10012244.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGAACCGATTTCTCGCCTCCATTTGCTTTGCTAGAAGGCGGTGGTTACAATGCTAATTCTGGTAACAATAAGGATATTACCAGTAGAAATG TCTTGCCGCCGGCTTCCCAGAACCCTAACTCCGACGAAAATTCAGAAGGGCTCAAGCGAATGCCCAATGGGAAGCCTCCCCGGCACGTCTCTGTTTCTCG CCACGCCATCCTCGCCGCTGGCGATCTGGCAATGGAGGTTGGGATTGTCGTCAATAAGTCGCCTACCGACGACAAGGCTGATTATTTACCGGTTTTCCGG TCAGGGAGTTGCGCCGAAGAAGGTCCCAAGCAGTACATGGAGGATGAACATGTCTGCATAGATGATCTCAACGAGCATCTCGGTTCCACTGCCAACTTAT CTTCATCTGGAGCTTTCTATGGGGTGTTTGATGGCCATGGTGGTACAGATGCATCTTTGTTCGTGAGAAAGAATATATTGAGATTCATAGTTGAGGATTC CCAGTTTCCTATTTGCGTAGAGAAGGCCATTAAGAGTGCTTTTCTGAAAGCCGATTTTGCATTTGCTGATGATGCTTCAGTTGACATTTCCTCCGGCACC ACCGCCATCACTGCCCTTATGTTTGAACGGACGTTAATTATTGCGAATGCTGGGGATTGCCGCGCGGTGTTGGGAAGACGAGGTAGAGCGATCGAAATGT CCAAAGACCACAAGCCTAACTGCACGCCCGAAAAACTAAGAATCGAGAAACTCGGCGGGGTTATCTACGACGGATACCTCAACGGACAGCTGTCAGTTTC GCGTGCACTCGGTGACTGGCACATGAAGGGTACTAAGGGCTCTGTATGCCCACTGAGCGCTGAGCCCGAGTTGCAAGGAACGAGCTTGACTGAGGAAGAC GAGTTCTTGATATTGGGGTGCGACGGCCTGTGGGATGTAATGAGCAGCCAGTGTGCGGTGACCATTGTCCGGAAAGAACTGATGATTCACAATGATCCTG AAAAATGTTCGAAGGAGTTGGTCAGGGAAGCTCTGAAGCGAAACACGTGTGATAATCTAACGGCCGTAGTTGTATGCTTCTTGCCGGATCCACCACCCCC CGTTGAGGGCCCGCATCGCAGAGGACGAGGCAGGGTAAGNNNNNNNNNNNNGTGGAATACTATACCGGCCGTAGTTGTATGCTTCTTGCGGGATCCACCA CCCCGGATTGAGGTCCCTCATAGAAGAGTTCGACGAAGCATATCGCTGGAAGGTCTGAACTTGCTCAAGGGCGTGCTGGACGAAAACGAAAACTCGTGA
AA sequence Show only first row Show all	>Lus10012244 pacid=23172674 polypeptide=Lus10012244 locus=Lus10012244.g ID=Lus10012244.BGIv1.0 annot-version=v1.0 MAAGTDFSPPFALLEGGGYNANSGNNKDITSRNVLPPASQNPNSDENSEGLKRMPNGKPPRHVSVSRHAILAAGDLAMEVGIVVNKSPTDDKADYLPVFR SGSCAEEGPKQYMEDEHVCIDDLNEHLGSTANLSSSGAFYGVFDGHGGTDASLFVRKNILRFIVEDSQFPICVEKAIKSAFLKADFAFADDASVDISSGT TAITALMFERTLIIANAGDCRAVLGRRGRAIEMSKDHKPNCTPEKLRIEKLGGVIYDGYLNGQLSVSRALGDWHMKGTKGSVCPLSAEPELQGTSLTEED EFLILGCDGLWDVMSSQCAVTIVRKELMIHNDPEKCSKELVREALKRNTCDNLTAVVVCFLPDPPPPVEGPHRRGRGRVXXXXXWNTIPAVVVCFLRDPP PRIEVPHRRVRRSISLEGLNLLKGVLDENENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	0	1
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	2.6	0.9056
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	2.8	0.8671
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	3.9	0.8631
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	3.9	0.8677
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	5.7	0.8360
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	6.2	0.8766
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	7.3	0.8482
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	7.7	0.8466
AT1G74160			unknown protein		Lus10017857 [exp]	9.8	0.8486
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	9.8	0.8141

Compare expression of checked genes

Lus10012244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.