Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42540 1216 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 1016 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT3G51480 999 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G17260 998 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G05200 975 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 894 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 758 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29120 476 / 4e-153 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 465 / 7e-149 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 461 / 2e-147 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016031 [exp] 1655 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 1088 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 1011 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 1004 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 924 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 903 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 899 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 850 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 844 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253800 [exp] 1406 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G007400 [exp] 1359 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 1132 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.009G168300 [exp] 1103 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.002G230000 [exp] 1027 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 1016 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.014G152200 [exp] 1013 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G229900 [exp] 866 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012100 [exp] 524 / 4e-171 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 520 / 8e-170 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10012245 pacid=23172661 polypeptide=Lus10012245 locus=Lus10012245.g ID=Lus10012245.BGIv1.0 annot-version=v1.0 ATGAATGCAATCAAGGATCTTCTCCTTCTGTTTCTGTTCTTGACGCTATTCCCTGTTGGCCACAGTGGAAATGGTACCTCCACTTCCAGGCCTAGTGTAG TAAACATTGGGGCCTTATTCACGTTTGAATCTTCCACCGGAAGAGTTGCTAAGATTGCCATAGAAGAAGCCGTCAAAGATGTGAATGCAAATTCCAGCGT CCTCCCTGGAACCAATCTTAAAGTGCAGATGGCGAACACGAATTGCAGTGGCTTCTTAGGCATGGTTGAAGCTTTGCAATTCATGGAGACTGATACAATA GCCATCATTGGCCCACAATCATCTGTAGTTGCCCACATCATATCCCATGTTGCAAACGAGCTCCAAGTTCCTCTCCTCTCATTTGCAGCAACTGATCCCA CTCTTAACTCCCTCCAGTTCCCCTTTTTCGTCAGGACAACACATAGCGACACTTTCCAAATGGCTGCTGTGGCCGAGATTGTAGATCATTACGGTTGGAA ACAGGTTACTGCCATTTACATAGACGATGACTATGGCCGGAATGGCTTGTCAGCTCTAGGTGATAAGCTTGCCGAGAGGCGCTGCAAGATTTCGTACAAG GTAGGCATTCCTCCTGAATCCGGTGTCAGCAGCAGCGACATAATGGATCTTCTTGTCAAAGTCGAAATGATGGAATCTCGAGTTATTGTACTCCATGTTT ATCCTCAAAAGGGTCTCGAGGTTTTCTCCATGGCAAACTATCTTGGAATGATGGGAAATGGCTACGTATGGATAGCTACAGATTGGCTTTCATCTGTACT TGATTCTACTCCGCTCCCTTCAGAAACAATGGAGAAAATCCAAGGAGTAATCGTTCTACGCCAGCATACACCAGATTCAGACCGAAAAAGATCGTTCCTT TCTAGGTGGAACAAGGTCACTGGAGGCTCTATAGGGCTGAACTCTTATGGTTTATATGCTTATGACTCTGTTTGGCTAGTTGCACACGCCATCGATGCAT TCTTCAACCAAGGTGGTGTCATTTCATTCTCCAACGATTCGAGATTATCTGCAGGAGGAGACAGTAATCTTCATCTAGACGCTATGAGCATTTTCAACGA TGGGAGACATCTCTTAAAGAACATACTTCAACAGGGTGATCTTGTTGGTTTGACTGGTCCTATCAAGTTTGGATTGGACAAGTCTCTAAACCGCCCGGCT TATGATGTTATCAATGTGGTTGGAACCGGGTTTAGAAGGATTGGTTACTGGTCAAACTATTCTGGCTTATCAACTATCCCTCCTGAGAGTCTTTACACGA GGCCACCGAATCGTTCAGTTGCAAACCAGCATCTGTATAGTGTCATTTGGCCTGGTGAGACCTCATCCAAGCCTCGTGGATGGGTTTTCCCCAACAACGG GAAGCTGTTAAGGATCGGAGTCCCTCTTCGAGTGAGCTACAAGGAGTTTGTATCGCCCGTTCGAGGAACATCTGATAAGTTTCAAGGCTTTTGCATAGAT GTGTTCACAGCAGCTGTGAACTTGTTGCAGTATCCTGTTCCGTATCAGTTTGTTCCTATTGGAGACGGGAAGAAGAACCCGAGCTATACGGATATTGTGA ATTCGGTCTATACAGGCAGTCTTGATGCTGCAATTGGCGATATTGCGATTGTTACAAACAGAACGAAGATAGTAGACTTCTCACAGCCTTATGTGGCGTC TGGTTTGGTTGTGGTGGTGCCATTTAGGAAGATGAACACAGGTGCTTGGGCTTTCCTTAGGCCATTTAGTCCCCTTATGTGGATTGTCACAGGATGTTTC TTCCTAGCTGTTGGCATTGTTGTGTGGATACTGGAACATAGGATCAACGACGAATTCAGGGGCCCTCCGAAAAGACAAGTCATAACTGTTCTATGGTTCA GCCTCTCAACTTTGTTTTTCGCCCACAGAGAGAACACAGTGAGCACACTTGGGAGGATGGTGCTACTAATATGGCTCTTTGTGGTTCTCATAATCAACTC AAGTTACACAGCCAGCTTGACATCAATCCTCACAGTACAGCAGCTGTTTTCTCCAATCAAAGGAATCGAAAGCTTGAAGAAAGGCGACGACCCTATAGGA TACCAAACCGGTTCCTTTGCCGAATACTATCTAACAGAGGAACTAGGAATAGCCAAATCTAGGCTGATTGAGCTTGGGACCCCTGAAAAATACGCTGAAG CCCTCCAAAAGGGACCTAAGAACGGCGGAGTCGCTGCTGTCGTTGATGAACGACCCTACGTCGAGATTTTCCTCTCGTCTCAATGCAGCTTCAGAATCGT CGGTCAAGAATTCACGAAAAGTGGTTGGGGATTCGCATTCCAAAGAGACTCTCCACTAGCTGTGGACATATCGACCGCAATCCTGGAGTTATCGGAGAAT GGAGATCTGCAAAGGATCCACGATAAGTGGCTGATGCAAACCAGTTGCAGCTCGGACACGACAGAGATCGAATCGGACAGGCTGCATCTGAAGAGCTTCG TGGGACTGTTCCTGATATGTGGGGTAGCGTGCTTTATAGCTCTTGTGATATACTTTGCGCAGGTGATCCGGCAGCTGTATAGGTCCCACCCTGCAGATGA AGCGTTGGAGTCTGGTCATGGAAGCTCTTCGCGATCTAGGAGTATCCATCGGCTGTTCTCGATAATGGACGAGAAGGAGGACATTTCGAAGAAGGGTAGT AAGAGAAGGAAGTTGGAGCGTTCATCGTCGGTTAATAGCAAGGAGAGTGAGCTTGGAAATAATGGGAGAAGGAGCGGAGTGGATCCACCAAGACGTAGCA GTAGCATGAATGGGAATGGGATCAACCCTTGTGAGTAA
AA sequence Show only first row Show all	>Lus10012245 pacid=23172661 polypeptide=Lus10012245 locus=Lus10012245.g ID=Lus10012245.BGIv1.0 annot-version=v1.0 MNAIKDLLLLFLFLTLFPVGHSGNGTSTSRPSVVNIGALFTFESSTGRVAKIAIEEAVKDVNANSSVLPGTNLKVQMANTNCSGFLGMVEALQFMETDTI AIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLNSLQFPFFVRTTHSDTFQMAAVAEIVDHYGWKQVTAIYIDDDYGRNGLSALGDKLAERRCKISYK VGIPPESGVSSSDIMDLLVKVEMMESRVIVLHVYPQKGLEVFSMANYLGMMGNGYVWIATDWLSSVLDSTPLPSETMEKIQGVIVLRQHTPDSDRKRSFL SRWNKVTGGSIGLNSYGLYAYDSVWLVAHAIDAFFNQGGVISFSNDSRLSAGGDSNLHLDAMSIFNDGRHLLKNILQQGDLVGLTGPIKFGLDKSLNRPA YDVINVVGTGFRRIGYWSNYSGLSTIPPESLYTRPPNRSVANQHLYSVIWPGETSSKPRGWVFPNNGKLLRIGVPLRVSYKEFVSPVRGTSDKFQGFCID VFTAAVNLLQYPVPYQFVPIGDGKKNPSYTDIVNSVYTGSLDAAIGDIAIVTNRTKIVDFSQPYVASGLVVVVPFRKMNTGAWAFLRPFSPLMWIVTGCF FLAVGIVVWILEHRINDEFRGPPKRQVITVLWFSLSTLFFAHRENTVSTLGRMVLLIWLFVVLIINSSYTASLTSILTVQQLFSPIKGIESLKKGDDPIG YQTGSFAEYYLTEELGIAKSRLIELGTPEKYAEALQKGPKNGGVAAVVDERPYVEIFLSSQCSFRIVGQEFTKSGWGFAFQRDSPLAVDISTAILELSEN GDLQRIHDKWLMQTSCSSDTTEIESDRLHLKSFVGLFLICGVACFIALVIYFAQVIRQLYRSHPADEALESGHGSSSRSRSIHRLFSIMDEKEDISKKGS KRRKLERSSSVNSKESELGNNGRRSGVDPPRRSSSMNGNGINPCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	0	1
AT2G01913			unknown protein		Lus10035103 [exp]	4.5	0.8213
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	4.9	0.7226
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	6.0	0.7860
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	7.2	0.8070
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	18.4	0.7754
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	19.0	0.7569
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	19.6	0.6570
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	21.7	0.7712
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	22.3	0.7637
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	24.5	0.7572

Compare expression of checked genes

Lus10012245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.