Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45230 92 / 3e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17880 83 / 2e-17 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G11170 76 / 4e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 76 / 5e-15 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 75 / 2e-14 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G36150 74 / 2e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 72 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45200 69 / 9e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 69 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 69 / 2e-12 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 565 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 408 / 2e-133 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 153 / 3e-41 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 138 / 6e-36 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 138 / 6e-36 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001537 [exp] 133 / 1e-34 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10024150 [exp] 129 / 6e-33 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10009107 [exp] 124 / 2e-31 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 120 / 4e-30 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 109 / 2e-26 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 107 / 2e-25 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 104 / 1e-24 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 103 / 3e-24 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 101 / 2e-23 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 100 / 4e-23 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 99 / 2e-22 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G030318 [exp] 92 / 2e-20 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G097720 [exp] 89 / 5e-20 AT1G63860 79 / 3e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G010800 [exp] 89 / 2e-19 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10012247 pacid=23172704 polypeptide=Lus10012247 locus=Lus10012247.g ID=Lus10012247.BGIv1.0 annot-version=v1.0 ATGTTACCTGAAATTCCTGGAAACGCCACTGCTAGAGATCTGAGGCTGCTGGTGGTGGAACAGTGCGACGCGTTCAAGCACTTACCGTCCAGCATCAACA GCCTCAAGTCCTTGGAGGTAATGTCGCTAACTGGATCCAGTATCAGGGTGTTGCCTTCGTCTATACAGGAATTGGAGCAGCTCCGTACGTTGGATATGTC TCATTGTAAGAGTTTGGAGTCACTTCCGAGCACGATGAGTATGCTTGGCAAGTTGTCACAAATTTACTTGGTGGGTTGCCTTAGCCTTCGTTCTCTGCCG GAACTTCCCCGGAATGTCAAGACGTTGGCTGCCGGCAATTGCAAATCGTTGCAAGCTGTTTCCAGCAGCAACTTCAGGAAGCTTCATTTCCGCCACCTCA GCTTCGTTGGTTGCAGCCAGCTGGACGAGAAGTTGCTTGGCCGATTGATGGCTAAGTTGCATCTTCATGATCCCACATCACTCCAATCTCCGTACGTTGG GCGCATTGGTGAGAGACACCCAACGACGGCTCTGTATCCTGGTAGCGAGCTTCCGGAATGGTTTGCTTACAAAAGCACGGGGGATTTGGTAACGATCCCT TTGCCTAAAAACAGCAAGCGACTGAAGGGAATCTCTTTTGCCACCGTGTATAATCTGGGAGCTTCCGACGACAAGGATACTGACATTCATCTCCACATGA AATGCGAATGCTTTGTGAAACCGGCAGGCGGTAGCCACGGATGTGTGAGCGATGATGTTGGTGGCGCTGTGGAGCCATGGATTGTATGTATGAGCGACTT CCATGATTGTGTATCGACGGACCATGTTTTCCTGTGGTCGGGCCACCGACCTGATCAGCCCCCATCATCCGGTGAAAGAGATGAAGGTGAAGGAGGAGAA GCTTGGTGCGTCAAATATTCTGGACAGGAACTTTCTTTCAGGAGATGTAAAGCACTGTAA
AA sequence Show only first row Show all	>Lus10012247 pacid=23172704 polypeptide=Lus10012247 locus=Lus10012247.g ID=Lus10012247.BGIv1.0 annot-version=v1.0 MLPEIPGNATARDLRLLVVEQCDAFKHLPSSINSLKSLEVMSLTGSSIRVLPSSIQELEQLRTLDMSHCKSLESLPSTMSMLGKLSQIYLVGCLSLRSLP ELPRNVKTLAAGNCKSLQAVSSSNFRKLHFRHLSFVGCSQLDEKLLGRLMAKLHLHDPTSLQSPYVGRIGERHPTTALYPGSELPEWFAYKSTGDLVTIP LPKNSKRLKGISFATVYNLGASDDKDTDIHLHMKCECFVKPAGGSHGCVSDDVGGAVEPWIVCMSDFHDCVSTDHVFLWSGHRPDQPPSSGERDEGEGGE AWCVKYSGQELSFRRCKAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	0	1
AT3G59310			Eukaryotic protein of unknown ...		Lus10003247 [exp]	1.0	0.9616
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	1.4	0.9568
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	3.3	0.9407
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	4.2	0.9541
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	6.2	0.9287
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	7.5	0.9514
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	9.4	0.9353
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	11.1	0.9279
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	11.4	0.9472
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	12.4	0.9430

Compare expression of checked genes

Lus10012247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.