Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20760 795 / 0 Calcium-binding EF hand family protein (.1) AT1G21630 391 / 3e-117 Calcium-binding EF hand family protein (.1.2) AT4G05520 80 / 4e-15 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 76 / 6e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016028 [exp] 1657 / 0 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016689 [exp] 384 / 6e-115 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 281 / 7e-82 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10035983 [exp] 206 / 2e-56 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10043181 [exp] 79 / 1e-14 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 78 / 2e-14 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008600 [exp] 1062 / 0 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 1013 / 0 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 656 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 585 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008300 [exp] 80 / 8e-18 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 84 / 3e-16 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 74 / 3e-13 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012248 pacid=23172696 polypeptide=Lus10012248 locus=Lus10012248.g ID=Lus10012248.BGIv1.0 annot-version=v1.0 ATGGCGAGCATGGATCAATTCGATGCTTACTTCAGAAGAGCAGATTTGGATGGCGACGGCAAGATCAGTGGAGCTGAGGCTGTCGGTTTCTTTCAAGGAT CCAATTTGCCCAAGCAAGTCCTTGCTCAGATATGGATGCATGCTGATCAGAGCCGCAGTGGCTTCCTTGGTCGCCCAGAGTTTTACAATGCTCTAAAGCT TGTGACGGTTGCTCAGAGCAAGCGAGAACTGACCCCGGAGATTGTAAAGGCTGCTCTATATGGCCCTGCTGCAGCCAAAATCCCGGCACCACAAATTAAT CTTGCAGCAGTTCCTGCACCTCAAGTACGTCCAATGGGTGCTGTTTCTAATCCACAAATGGGTATGCCCGGCTCCACTGCACAAATGGGTATGCCCGGCT CTGCTCCAGCTCATACTCCTGGCATTAGACCGCAGGGTGTTCCAACCTCCGCTATGAGTCCCCATTACTTTCCTCCTCAACAAAACCAGTTCATGAGACC AGCTCAGAGAACTCATCCTGTGTCTGGCCCTCGACCTCCTCAGGCAATTGCTCCAGTAGTCGCTCCTCGACCACCTCAGATGAATCCTCCTGCAGCTGCT CCTCAATTTCCTCAGGCTAGCTTGATGGTTAACTCTCAGCCTATGCCTACTAGTAATGCTTATCGTCCGCCCCTCCAACACATGGCTGGTGGTCCTTCTG GTTTTGGCACATCTAACTCAACTATCTCAACTGATTGGCTGGGTGGAAAAATGGGTGGACCTGTACCTGGTGCTGGCTCCAGAGGTGCAAGCCCAGCTTC GTTTTCTTCAGGTTTGCAGCAACCAAGTCCAACGTCACTGTCCTCCCCGTCTACTGTTGGAGACTCCAAAGCTATAGTGCCTTCTGGCAGTATGTCTGCA ACTACCTCCTCATTTGGAGACGACATGTTTTCAGTGATGGCTTCTACAAAAAAGCAAGAACCTCCTAAGCCAACATATTCTGCTGCTAACGCACCTGCAG CATCTGCTCTGGCTCCTGTTTCTTCTTCTGTTCAAGCCCCTACCAAGTCCAATTCACTCGGTTCACTGCAGGATGCCTTTGCAATGCAATCTTTGGGGGG ACTTCAACGGGCGCAATCATTACCAACAACAGGACAACAGGTTTCAACTTCAGGTCCTGCCTTACCTGCTTCACCTGGAACTTCTGTTGGACTAGCAAGT ACCACTGACAACTCTCAGATTGTGTGGCCAAAGATGAAACAAGCAGAAATTCAGAAGTACACGAAGGTATTCATAGAAGTAGACACGGACAGAGATGGAA AGATTACTGGTGAGCAGGCACGCACTCTTTTTCTAAGCTGGAGGTTACCAAGAGAGGTTTTGAAGCAGGTTTGGGATTTATCTGATCAGGACAGTGATAG CATGCTTTCTTTAAGGGAATTTTGCTTTGCTCTTTATTTAATGGAGCGATTCAGGGAAGGTCGTCCTCTGCCAGCTACCTTACCTCGTAGTGTGATGTTC GACGAGACACTGATGTCCATGACAGGCCAACCTAAGGCGGGATATGGAAATGCTGCATGGGCTCCTGGTGCTGGTTTTGCTCAGCAACCAGGAACAGGCT CTCGATCAGTTCCAGTAACAGGACCTCAGCATGATGTTGCTGCAGTATCCAGTCAGAGCAAGCAAGCAGCTCCTGTGCTGGATGACTCCTTTCTGAGGCA TGAGAATGGCGAGCAGAATTCTGCAAACTCGTTGGTGGAAGATGGAGCAACTACAGAGAAAAAGGCAATTTTTTCCTCTCCTGATCTCTGTCCAATTGAT ATTTTCATCTGTCCTGCGGAAGTTTTCTTTTCATTTCACCTTGAGCTACTTCTCAAGACATCACCGTACATACATTGTGACAAGAATGACAGAATTATAC ATGCAGAGAAGTTGATATTGGATTCCAGAGAGAAAATTGAGTACTACCGCAGTAAGATGCAGGATCTTGTTCTATATAAGAGCAGATGTGATAATAGGCT GAATGAAATCACAGAAAGAGCACTAGCAGATAAGCGTGAGGCTGAGATTTTGGGTAAGAAGTATGAAGAAAAATACAAGCAAGTAGCGGAAGTGGTCTCT AAGTTAACTATTGAAGAGGCCCAATTTAGGGATATTCAGGAAAGAAAGAAAGAGTTGCATCAAGCAATTGTTAACATGGAGCAAGGTGGCAGTGTAGATG GCCTTCTTCAGGTCCGTGCAGATCGTATACAGTCAGATCTGGATGAATTGATTAAGGTCTTGGTTGAGCGTTCCAAGAAGCATAGTTTGGATATCAAGTC ATCTGCCCTGATTGAGCTTCCCCTTGGATGGCAACCTGGAATTCAGGAGACTGCAGCTCCTTGGGATGAAGAATGGGATAAGTTTGAAGATGAAGGTTTT GCCAATGAGCTTACTATTGATGCGAAAAACGTCGCCGAAACCACCAATGGAAAGCCCAATGCTGTGCAGAATGGGAAAGCATCATCAGATGGTAGTTTAA CTCCTGATTCCTTGTACAATGGTGATGCAAAATCTGGGAACTTCAGGAACACCCATGAGCATACCCTTGAGGAGAATGAATCTGCATACATTCACAGTGA AGATGAATCGGCAAGAAGCCCCCAAGGCAGCCCTGCTGGAAGAATTACTCGTGAAAGGCCATCACAGGACTTCTCTGATGTTTTTGCGAAGAGCACTGTA GGAGATTCAGAAGAACATGGAAGTTTCGATGATTCGGCATGGGGTGCAGCATTTGACACTAATGACGATGTGGATTCTGTATGGGGATTTAACCCAAGCA CCAAGGACACTGATTCAGAGAAACATCAAGACTTCTTTGGTTCCCATGACGACTTTAGAATGAAGCCAATCAGGACTTCAGGATCTCCAACCACGGACCA TATGTCCCAGAAGAAGAGCATATTCTTCGAGGAATCCGTTGCTGGCTCTCCCATGTCCAGATATGCCAACTCGCCAAGGTTTAGTGAAGCCGGTGACCAG TTTGACACCTTCTCCAGATTCGATTCCTTAAGCATGCTTGAAAGCAGCGGGTTTTCGCCGCAGAAAGAAAAGCTTACCAGATTCGACTCTATAAACAGCA CCAAAGACTTTGGCGGCAGCAGCGGGTACAATCGTTCATTTTCTTCTTTCGACGATGGCGACCTATTCGGGTCTAGCGAGCCGTTTAAAGTTACCTCGTC GTCGGAACATCAGAGTCCTAAGAAAAGCTCGGACAATTGGAATGCTTTCTAA
AA sequence Show only first row Show all	>Lus10012248 pacid=23172696 polypeptide=Lus10012248 locus=Lus10012248.g ID=Lus10012248.BGIv1.0 annot-version=v1.0 MASMDQFDAYFRRADLDGDGKISGAEAVGFFQGSNLPKQVLAQIWMHADQSRSGFLGRPEFYNALKLVTVAQSKRELTPEIVKAALYGPAAAKIPAPQIN LAAVPAPQVRPMGAVSNPQMGMPGSTAQMGMPGSAPAHTPGIRPQGVPTSAMSPHYFPPQQNQFMRPAQRTHPVSGPRPPQAIAPVVAPRPPQMNPPAAA PQFPQASLMVNSQPMPTSNAYRPPLQHMAGGPSGFGTSNSTISTDWLGGKMGGPVPGAGSRGASPASFSSGLQQPSPTSLSSPSTVGDSKAIVPSGSMSA TTSSFGDDMFSVMASTKKQEPPKPTYSAANAPAASALAPVSSSVQAPTKSNSLGSLQDAFAMQSLGGLQRAQSLPTTGQQVSTSGPALPASPGTSVGLAS TTDNSQIVWPKMKQAEIQKYTKVFIEVDTDRDGKITGEQARTLFLSWRLPREVLKQVWDLSDQDSDSMLSLREFCFALYLMERFREGRPLPATLPRSVMF DETLMSMTGQPKAGYGNAAWAPGAGFAQQPGTGSRSVPVTGPQHDVAAVSSQSKQAAPVLDDSFLRHENGEQNSANSLVEDGATTEKKAIFSSPDLCPID IFICPAEVFFSFHLELLLKTSPYIHCDKNDRIIHAEKLILDSREKIEYYRSKMQDLVLYKSRCDNRLNEITERALADKREAEILGKKYEEKYKQVAEVVS KLTIEEAQFRDIQERKKELHQAIVNMEQGGSVDGLLQVRADRIQSDLDELIKVLVERSKKHSLDIKSSALIELPLGWQPGIQETAAPWDEEWDKFEDEGF ANELTIDAKNVAETTNGKPNAVQNGKASSDGSLTPDSLYNGDAKSGNFRNTHEHTLEENESAYIHSEDESARSPQGSPAGRITRERPSQDFSDVFAKSTV GDSEEHGSFDDSAWGAAFDTNDDVDSVWGFNPSTKDTDSEKHQDFFGSHDDFRMKPIRTSGSPTTDHMSQKKSIFFEESVAGSPMSRYANSPRFSEAGDQ FDTFSRFDSLSMLESSGFSPQKEKLTRFDSINSTKDFGGSSGYNRSFSSFDDGDLFGSSEPFKVTSSSEHQSPKKSSDNWNAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	0	1
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	1.0	0.9527
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	3.2	0.9173
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	3.9	0.8965
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	4.9	0.9278
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	5.7	0.9267
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	6.2	0.9270
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	7.9	0.9083
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	8.0	0.8963
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	8.4	0.8654
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	10.6	0.8965

Compare expression of checked genes

Lus10012248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.