Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20720 1029 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20750 822 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20650 491 / 8e-161 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 463 / 3e-150 Protein kinase superfamily protein (.1) AT5G18610 447 / 1e-142 Protein kinase superfamily protein (.1.2) AT5G13160 439 / 3e-140 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 433 / 3e-139 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 408 / 3e-130 Protein kinase superfamily protein (.1) AT3G07070 410 / 5e-130 Protein kinase superfamily protein (.1) AT1G07870 395 / 1e-124 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016027 [exp] 1934 / 0 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016021 [exp] 636 / 0 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10030741 [exp] 536 / 8e-178 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10033966 [exp] 448 / 7e-143 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 448 / 8e-143 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 443 / 9e-142 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 433 / 4e-139 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 426 / 2e-136 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 426 / 3e-136 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008700 [exp] 1304 / 0 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G009300 [exp] 508 / 2e-167 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 508 / 3e-167 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 448 / 6e-143 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 440 / 1e-140 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 441 / 4e-140 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 434 / 4e-139 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 429 / 1e-137 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 426 / 8e-137 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 429 / 2e-136 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012249 pacid=23172707 polypeptide=Lus10012249 locus=Lus10012249.g ID=Lus10012249.BGIv1.0 annot-version=v1.0 ATGGGCAAAGTCATTTCCACGCTTGAGCGAGCTCTGAGGGAAGGCCACTCACACGCTTTGCTCGAGTCTCCAACCGGCACTGGCAAATCTCTATCGCTGC TCTGCTCAACTCTCGCATGGCAGCAGACCCAGAAGCTGAAGAATCTCTACGCCAATCTCACCCACTCCAAACCCGATCCTCAGGCGATGGCCGATCCTCT TGCTCATGGCGGCGGATTCGTTCCTGAAACCCAGCCTTCGAGAAATCTGCCTCCCTCGATGGTAGAGCCAGGTAATCCAGCACCGGGGATGAAAAAGAAA AAATCAGCACCTACCATCTTCTATGCATCGAGGACACATGCACAAATTTCTCAACTGGTGCGCGAGTATAAGAAAACTACATATCGCGTGCCAATGACAG TATTGGCTTCGAGGAAACATTACTGCACAAACAAACTTGTAATTCAGACGGGGAATATTGATGAAGAATGTAAGCTGCTAATGAAGGATATTGAAGATGG AGGTGGATGTTCATACTTCAAAAATGTGCATAAGCTCAAGGCTCATTCCTCACTTCAAAAGGGAGGTTGCTACGAGGTTCATGATATTGAAGATCTTGTG AAAGTTGGAAAGGCTGTTAAAGGTTGTCCATATTACGCTGCCCGCTCAATGGCAGATGACGCGCAGTTGGTGTTTTGCCCCTACAATTACGTAATAAATC CAATCATTCGAGGTGCGATGGAAATCGATATCAAAGGAGCCATTATTGTACTCGATGAAGCCCACAATATTGAAGACATCGCTCGTGACGCTGGTAGTGT GGATCTAGAAGAAGATGTTTTACAGAAATTACAAACGGAGTTGGAAGAACTTTGCTCAAGTGATGGATTAACATACCAGCCCTTGTACGAGATGACACAG GGCCTAATAAGTTGGATGGATCGGAAGAAAAGTACGCTTGAAATGCGTGACTTTCAGCAGTACTATTCTTGTTGGAGCGGTGATCAAGCTTTAAGGGAGC TTCAAGAAGCTAATATTTCACAGCAGTATTTCCCTATCTTGTTAGAGTGTGCCCTAAAGGCTATTAAAGCTGCAACTGATGTGGAGTCAGAATTGCCTCT TTTAAGCGGCATGTCAGTGACAATTTTGGAAGGTTTGTTCTCTGCGCTCACATATTTTTTTGCAAGAAATGGATCCCATATTTCTGATTACCAGCTTGTT GTGCAACGAAAGGTCAAGAAAGACTCAAAAAACGATGTTGGTGGCTGGACACATATTTTTAGCTTGTGGTGCTTGAATCCGGCTGTTGTGTTCAAGGACA TTGCTGATCTATCTTTGTCAGTCATCCTAACATCCGGGACTCTGTCACCTATGAATTCCTTCTCATCTGAGCTTGGAGTGAACTTTGGAAATTGTCTAGA GGCCCCACATGTGGTTAATATTAAATCACAGGTGTGGACTGGTGTAATATCCTCTGGTCCTGGAAACTATCCCTTAAATGCCAGTTTCAAGACTGCAGGT GCATTTTCCTTCCAGGATGCACTTGGGAAATCTTTGGAGGAAATTTTCAAAGTTGTTCCTGCTGGTTCCCTTGCCTTCTTCCCAAGTTATAATTTGCTGG AAAAACTGTCCAAGCGGTGGCGTGAAACAGGTCAATGGGTGAGACTTAATGCGCAGAAGTCCCTCTTTGTCGAGCCAAGAGGAGGAACTCAAGAGGATTT TGATTCTCTTATAAAGCGTTACTACAATTCAGTTTCCCGGCATAGCAAAGTTCCTGTTGGAACTAAGAAAAAGAACAAAAAACCAGATCTAAAGAACACT AAGACACCTGAGCCTCCCACGACTTCTAAGAAAGATGGAGGTGCTTTTCTTGCCGTTTGCAGAGGAAAGGCCTCTGAAGGAATAGACTTTTCAGATGATA ATGCCCGAGTAGTTGATATCCAAGTCTGTTTGAAGAAGAAATACAACGACAGTTACAAATCAAGTAAGAACCTTCTAAGTGGGAGTGAGTGGTACTGTCA CCAAGCTTTCCGAGCACTGAATCAAGCTGCAGGACGTTGCATACGGCATAAGTCTGACTATGGAGCCATCATCTTCTTAGATGAACGTTTTCAGGAAGAG AGGAACACAGTATACGTTTCCAAGTGGCTCAGACAGTCCATTCAAAACTATAGAAGCTTTGATGAGTCACTTGAACGATTGAAATGCTTTTTCAGAGACG CCAAGAATATACTTGGTGAAACTACACCTACTCCAGTGCCAAATTATACGGTTACGGAGGAGAAAGATGTACCTAAAGATCTAGAGAATAGCTGTACTGG GGGAAGCTCTCATAGATTGAGTGGACCTTGTTGCCGTGGACAGAAGCTAGTTGCTGCACCAAAGTGTAGCCCCTCCGTGAACTTAGACCTCGAGCCTGAA GCCCAGCCAATCGTAATAGAAGACGACGGCATTGAGAGTTGCCCAGTTACTGATCTAGAATGTAATTCACCAATGGGCACAAGGTTTGATGATGCATTAA CCATTGTCAAGGAAACTCCTGATATAGATAGAAATAGCCCAAAAACTTTATCTACAGGTATGGATTATGGCTCAAGCATGATTGAACCCTCTTATGAGAT GACAACTCCCACAACAAGCCTTCTCCAAGTCCAGGGTTCATCAATAGGCAGTCCCAAGAAACTGTTCTCTATATCCACCTTCAGCCCGTCAGAAGAAGTT GAAACTTCTCTTATTCGAAGTGTTAATTCTCGCACCCAGAAAAGAAGGAAATTGGTAGACTCATCACCTTTGGTTCTTCCTTCAGATGACAACTCTGGTA TCTGCAATGTCGCAACTTTGGGATGTGTCAGTTCCGAAAGACGTCCTTTCTCTGGTTTGGAGTTAAATGGCACGATGCAACGTTTATCTTTTGGTCCATC TGTAAATAAAAACCTGAAAATTTCCTGCTTTCTTTGTGAAAAACCATTGGGTCGTCCAGAGAACGACCTTTTTGTTGAGTGCCTGGCAACTTCGTCGTCA AAAGTTCATTTAGTGTCCCTTGCAAAGGACGGTTTGGGAGATGAAGCGGAGAATACTTCAACAAAGGTGCCTGTTGTAGTAGCAGAAAGACTATCAGTCG ATCATATGCTATGTAATAGTGCTCGAGAAGATGTTCCTGCTGAAGGAGTTTGGTGCGAGGAAGATGGATGTGTTTTCAAGTCAATCTATTGTCCATTCTG CACTAATCCCCATTGTCTTGGTGTTCAAGTCATGGCAACTGATTCATCAAATGTTCAGTTACTTAACAAGATAGTTCTTTTGTACGATCGCCTCCAAGTC CAGACTGTGGGTACTTCAGAGGACAAGGCTTCAAAAAATCATCAGAACCACGTCCCAGTGAATGGTTGTGTTGGTAAAACTGCAGACCCGGATCAATTCA AGCGATTTTCATTTTCACCACAACCGAATTCTAATGGCTGGAGAAGTACAAAGCCAAATAATCCGCAACACAATTCGCTTCACGATAAATATGAGATAAA CGAACCTCCCAAAGCCGACGGTAGAGGTCTTGAAATTGGAGGACTAGTGCAGCGTGTTGATGATCCAGGTAGCGTGAAGAAGAAAGTTCTTGAGCTGAAT GTCAATAGCGCTCGCAGTTTCTCGTTACGTGAGCTGGCGGCTGCCACTCAGAATTTCAGGGATGCGAATCTGATCGGAGAAGGAGGGTTCGGTAGGGTTT ATAAAGGCCGCCTGGAAACTGGCGAGATTGTTGCGGTGAAACAATTGAACCAAGATGGTATGCAGGGGAATCAAGAATTCATCATCGAGGTTCTTATGCT GAGTCTCTTACACCACCCTAATCTCGTCACCTTGACTGGCTACTGTGCTGCCGGCGACCAGAGACTGTTGGTTTACGAGTACATGCCCATGGGAAGCTTG GAAACTCATCTTTTTGACGCGGATCCTGGTAAAGAGCCACTTAGTTGGGGCACAAGGATGAAGATTGCCGTTGATGCAGCAAGAGGCCTTCAACACCTGC ATTGCAAGACAACTCCACCAGTAATTTACCGCGACCTGAAATCAGCAAACATCTTGCTAGACAACGATTTCCACGCGAAGCTATCAGATTTCGGGCTAGC GAAACTAGGGCCCACTGGCGATAACACCCACGTTTCAACCAGGGTTATGGGAACGTACGGCTACTGTGCCCCAAAGTATGCCATGACTGGGAAATTGACT CTCAAATCCGACATCTATAGCTTCGGTGTCCTTCTGTTGGAGCTTATTACTGGCCGGAAGGCTATGGATTATGAAAGAAGGCAACGGGAGCAGAACCTGG TAGCTTGGTGTCGGCCATTTCTGAAAGATCCGAAGAAGTACTTACAAATGGCCGATCCACAGCTTCAAAGACGCTACCCTCGCAGGTGCTTAACCTACGC TGTTGCCATAACCGAAATGTGTCTGCACGAGGAAGCACATTTCCGGCCACTAATCGGGGACATAGTAGTGGCCCTGGAGTACTTGGAAGCACAGAGTCTA CAGGCTGTGCAGAACACAAGCTCGAAAGAAAGGCACGAAGCGACATAG
AA sequence Show only first row Show all	>Lus10012249 pacid=23172707 polypeptide=Lus10012249 locus=Lus10012249.g ID=Lus10012249.BGIv1.0 annot-version=v1.0 MGKVISTLERALREGHSHALLESPTGTGKSLSLLCSTLAWQQTQKLKNLYANLTHSKPDPQAMADPLAHGGGFVPETQPSRNLPPSMVEPGNPAPGMKKK KSAPTIFYASRTHAQISQLVREYKKTTYRVPMTVLASRKHYCTNKLVIQTGNIDEECKLLMKDIEDGGGCSYFKNVHKLKAHSSLQKGGCYEVHDIEDLV KVGKAVKGCPYYAARSMADDAQLVFCPYNYVINPIIRGAMEIDIKGAIIVLDEAHNIEDIARDAGSVDLEEDVLQKLQTELEELCSSDGLTYQPLYEMTQ GLISWMDRKKSTLEMRDFQQYYSCWSGDQALRELQEANISQQYFPILLECALKAIKAATDVESELPLLSGMSVTILEGLFSALTYFFARNGSHISDYQLV VQRKVKKDSKNDVGGWTHIFSLWCLNPAVVFKDIADLSLSVILTSGTLSPMNSFSSELGVNFGNCLEAPHVVNIKSQVWTGVISSGPGNYPLNASFKTAG AFSFQDALGKSLEEIFKVVPAGSLAFFPSYNLLEKLSKRWRETGQWVRLNAQKSLFVEPRGGTQEDFDSLIKRYYNSVSRHSKVPVGTKKKNKKPDLKNT KTPEPPTTSKKDGGAFLAVCRGKASEGIDFSDDNARVVDIQVCLKKKYNDSYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKSDYGAIIFLDERFQEE RNTVYVSKWLRQSIQNYRSFDESLERLKCFFRDAKNILGETTPTPVPNYTVTEEKDVPKDLENSCTGGSSHRLSGPCCRGQKLVAAPKCSPSVNLDLEPE AQPIVIEDDGIESCPVTDLECNSPMGTRFDDALTIVKETPDIDRNSPKTLSTGMDYGSSMIEPSYEMTTPTTSLLQVQGSSIGSPKKLFSISTFSPSEEV ETSLIRSVNSRTQKRRKLVDSSPLVLPSDDNSGICNVATLGCVSSERRPFSGLELNGTMQRLSFGPSVNKNLKISCFLCEKPLGRPENDLFVECLATSSS KVHLVSLAKDGLGDEAENTSTKVPVVVAERLSVDHMLCNSAREDVPAEGVWCEEDGCVFKSIYCPFCTNPHCLGVQVMATDSSNVQLLNKIVLLYDRLQV QTVGTSEDKASKNHQNHVPVNGCVGKTADPDQFKRFSFSPQPNSNGWRSTKPNNPQHNSLHDKYEINEPPKADGRGLEIGGLVQRVDDPGSVKKKVLELN VNSARSFSLRELAAATQNFRDANLIGEGGFGRVYKGRLETGEIVAVKQLNQDGMQGNQEFIIEVLMLSLLHHPNLVTLTGYCAAGDQRLLVYEYMPMGSL ETHLFDADPGKEPLSWGTRMKIAVDAARGLQHLHCKTTPPVIYRDLKSANILLDNDFHAKLSDFGLAKLGPTGDNTHVSTRVMGTYGYCAPKYAMTGKLT LKSDIYSFGVLLLELITGRKAMDYERRQREQNLVAWCRPFLKDPKKYLQMADPQLQRRYPRRCLTYAVAITEMCLHEEAHFRPLIGDIVVALEYLEAQSL QAVQNTSSKERHEAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	0	1
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	8.9	0.8146
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	10.1	0.8053
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	15.9	0.8521
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	19.1	0.7394
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	23.5	0.8372
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	25.1	0.8205
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	28.8	0.7871
AT2G37960			unknown protein		Lus10035544 [exp]	29.7	0.8186
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	33.0	0.7947
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	37.6	0.8294

Compare expression of checked genes

Lus10012249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.