Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20700 142 / 1e-40 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT4G35550 142 / 7e-40 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20710 119 / 6e-32 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT1G20696 97 / 4e-24 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 94 / 7e-23 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 69 / 4e-14 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT3G51880 67 / 4e-13 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT5G45980 69 / 1e-12 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G33880 68 / 2e-12 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT4G35570 61 / 3e-11 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016026 [exp] 395 / 1e-138 AT4G35550 149 / 4e-44 WUSCHEL related homeobox 13 (.1) Lus10040447 [exp] 141 / 9e-40 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10023561 [exp] 141 / 1e-39 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10012252 [exp] 110 / 2e-29 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 110 / 5e-29 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10030738 [exp] 92 / 7e-22 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10013219 [exp] 74 / 1e-15 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10040192 [exp] 71 / 3e-14 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 71 / 3e-14 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252800 [exp] 203 / 7e-64 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 200 / 1e-62 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G101800 [exp] 168 / 8e-50 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1) Potri.005G252600 [exp] 89 / 3e-21 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 88 / 1e-20 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 83 / 5e-19 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 69 / 1e-13 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 66 / 9e-13 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.009G029200 [exp] 66 / 6e-12 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.011G061400 [exp] 66 / 8e-12 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10012250 pacid=23172650 polypeptide=Lus10012250 locus=Lus10012250.g ID=Lus10012250.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTAAATCAAAGTCGGAAGCCAAGAACACCAAGCTGTCTGTGACTAAGAAGCCTGCTAAGCCGACGAAACAGGCGGCGAAGGCAGCCAAGG ACCCCAACAAGCCTAAGAGGCCGCCAAGCGCCTTCTTCGTTTTCATGGAGGATTTTAGAGAGCAGTTTAAGAAAGATCATCCTAAGAATAAATCAGTGGC TGCTGTTGGGAAAGCAGCTGGAGAGAAATGGAAGTCATTGACCGACGCAGAGAAACAACCCTACATGGCCAAAGCTGAGAAGAGGAAGGCTGAATATGAG AAGAAAATGAAGGCCTACAACAAGGGAGAGGCCGAGGCAGCAACCAAGGATGAAGAGGAGTCTGAGAAGTCAATGTCCGAGGTGAATGATGATGAGGATG ATGAAGAGGGAAGTGCAGAGATGAGGGAGCAGCAGCAGCAGCAGCCGGATAGAAGGCCACAATTGGGAAATGGTGGAGGAGGAGAAGAAGAAGGAACAAT TTACAACAATGGCGCGGCGTTGATTAGGAATGGATTAGGAGTGAAAGTGATGACGGATGAACAGATGGAGATGCTCCGCAAACAAATCTCTGTTTATTCC ACCATTTGCGACCGTCTCGTCCAGATGCATACCTCTTTAGCTCTCAATCGCCACGAATTTCCTGGCATGCTGCAATATGGTGATCCTTTGTCAGCTTGTG GTTCATCCAAGATTCCTACGAGGCAAAGATGGGCGCCAAAGCAGTCACAGCTTCAGATCCTGGAGCGGATTTTCTCCGAGTGCAACTCGAATCCAGGGAA GGAGAGAATCAAGGAGATAACTGCTGAGCTCTTGAAATACGGCCACGTGAGTGAGAGCAGTGTTTATAACTGGTTCCAGAACAGGAGGGCTCGTTGCAAG AGGAAGCAATCAGCACCAGCCCCCAGAACGGGGAATTTCGATGTCGAAGCTGCTGCAAGGGTGGTCGACCATGCTGCTGCTGCTAAACAGAAGATCCCAG AGGATGATGATAATCACAAATCCCCACTTATCGTCGACCAGTTGTACTTCCACACTCCTGAGATTGGGATTGACCAACTGATTGGCAAATTGGAGGTTTG TGAAGGATTCAATTTATATTACCCGGAGCAGCAAAACGGGCCGTCCTCATGA
AA sequence Show only first row Show all	>Lus10012250 pacid=23172650 polypeptide=Lus10012250 locus=Lus10012250.g ID=Lus10012250.BGIv1.0 annot-version=v1.0 MKGGKSKSEAKNTKLSVTKKPAKPTKQAAKAAKDPNKPKRPPSAFFVFMEDFREQFKKDHPKNKSVAAVGKAAGEKWKSLTDAEKQPYMAKAEKRKAEYE KKMKAYNKGEAEAATKDEEESEKSMSEVNDDEDDEEGSAEMREQQQQQPDRRPQLGNGGGGEEEGTIYNNGAALIRNGLGVKVMTDEQMEMLRKQISVYS TICDRLVQMHTSLALNRHEFPGMLQYGDPLSACGSSKIPTRQRWAPKQSQLQILERIFSECNSNPGKERIKEITAELLKYGHVSESSVYNWFQNRRARCK RKQSAPAPRTGNFDVEAAARVVDHAAAAKQKIPEDDDNHKSPLIVDQLYFHTPEIGIDQLIGKLEVCEGFNLYYPEQQNGPSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	0	1
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	1.4	0.8981
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	1.7	0.8670
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	2.4	0.8611
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	6.7	0.8615
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	10.5	0.8718
					Lus10024539 [exp]	11.0	0.8226
AT3G26350			unknown protein		Lus10011406 [exp]	12.6	0.8287
AT5G65540			unknown protein		Lus10025712 [exp]	13.4	0.8658
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	18.8	0.8440
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	20.1	0.8412

Compare expression of checked genes

Lus10012250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.