Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) AT1G20680 101 / 2e-25 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2) AT1G20730 91 / 7e-22 Protein of unknown function (DUF833) (.1) AT1G20740 90 / 3e-21 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016024 [exp] 491 / 2e-178 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 402 / 1e-143 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10016023 [exp] 397 / 6e-141 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10026547 [exp] 254 / 1e-84 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10013833 [exp] 252 / 6e-84 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 167 / 2e-51 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252250 [exp] 324 / 2e-112 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1) Potri.004G206300 [exp] 280 / 5e-95 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10012251 pacid=23172708 polypeptide=Lus10012251 locus=Lus10012251.g ID=Lus10012251.BGIv1.0 annot-version=v1.0 ATGAATATCACAAAAGGCAACGAGCCTACATCAGCAGTTGAGTGGTGGACCGACATCGATATAGTCGGAGGAAGAGATGAGGTTGCCGGAGGGACATGGA TGGCTTGTTCCAGAGGAGGCAGAGTGGTTTTCCTCACTAACGTTATGGAGCTCCACGAGCGCCCTGATGCCAAGTCCCGTGGGGAGCTCCCTCTTCTTTT CCTCCAGAGCTCCAAGGCTCCAAGGGAATTTGCAGAGGGAATGGCAAAGGAGGCCGATCAATACAACGGCTTTAACTTGATTGTTGCTGACATCTTGTCA AACACCATGGTGTACATCTCCAACCGGGCTAAATGCGAAGAAGCCTTCATCGTCCAGGATGTTTCGCCTGGCATCCATGTTCTTTCCAATGCACACCTCG ACTCACCTTGGCCCAAGGAGCAGAAGCTGCGTCAGGGTTTCAAAGAAAAGCTGGTTAAACATGGAGATGGCGAAATCAATTTAAAGGAGATAGCAAAGAA GCTGATGAGGGACAGATCCAAAGCTGAGAAGAACAGGTTGCCTGGCATTTGTTCTGCCGATTGGGAGTATGCTCTAAGCTCCATTTTCGTTGAAGTCGAC ACCCCACTGGGACGGTGTGGCACAAGGAGCACTATTGCTTTGGCTGTGGAAAGAAGTGGGGAAGTTCACTTTCATGAGTCCTACCTGGAAGATGGAACTT GGAAGGAGAAAACTATCAATTACCGGATCCAAAGCAACCAAAAGTTCATACAGCTCAACAGTTGA
AA sequence Show only first row Show all	>Lus10012251 pacid=23172708 polypeptide=Lus10012251 locus=Lus10012251.g ID=Lus10012251.BGIv1.0 annot-version=v1.0 MNITKGNEPTSAVEWWTDIDIVGGRDEVAGGTWMACSRGGRVVFLTNVMELHERPDAKSRGELPLLFLQSSKAPREFAEGMAKEADQYNGFNLIVADILS NTMVYISNRAKCEEAFIVQDVSPGIHVLSNAHLDSPWPKEQKLRQGFKEKLVKHGDGEINLKEIAKKLMRDRSKAEKNRLPGICSADWEYALSSIFVEVD TPLGRCGTRSTIALAVERSGEVHFHESYLEDGTWKEKTINYRIQSNQKFIQLNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10012251 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Lus10012253 [exp]	1.0	0.9122
					Lus10007598 [exp]	19.3	0.8358
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	21.0	0.8703
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	22.6	0.8653
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	24.7	0.8617
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	35.2	0.8509
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	37.5	0.8445
AT1G16670			Protein kinase superfamily pro...		Lus10019933 [exp]	47.7	0.8297
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	48.9	0.7955
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	52.0	0.8409

Compare expression of checked genes

Lus10012251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.