Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 87 / 1e-20 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016023 [exp] 207 / 7e-67 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10012251 [exp] 166 / 4e-51 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10016024 [exp] 162 / 2e-49 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 123 / 5e-34 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10026547 [exp] 114 / 2e-30 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10013833 [exp] 113 / 5e-30 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252250 [exp] 143 / 8e-42 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1) Potri.004G206300 [exp] 128 / 5e-36 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10012254 pacid=23172686 polypeptide=Lus10012254 locus=Lus10012254.g ID=Lus10012254.BGIv1.0 annot-version=v1.0 ATGAAAAAATGTGGAACTAGGACAATAGGGGGAAAAGGTAGACAGTTGCAGAGTGAGCTAACTTTGGAATGGATAAAGCTCTTGAGAAATTGTGATAATA GACTGACTGCTGTGCTGACTCAATATGTTTGCTATATTAACATTAATGAGTCAGTTTCGATGCCAGACCTGGAAATTGGCGGAAGAGATGAGTTGGCCGG AGGGACATATGGCTGGCTTGCTCCAGAGGAGGCAGAGTCGCTTTCCTCACTAATGTTTTGGAGCTCCATGAAAGCCCTGATGCCAACTCCAGAGGCGAGC TCCCTCTCCTTTTCCTCCAGCTGCAAGAGTCCTAGGGAATTCGTGGAGGGTCTGGTTAAGGGGATCCATCAGTACAACGGGTTCAACTTGATCGTCTCGG ACATTTCGTCCAACGCCATGGTTTGTGATGTTTCCACTGGCCTCCATGTTCTTTCCAATGCAAACCTCGACTCTCCTTGGCCTAAGGTGCAGAAGTTGGG GTTGGGTTCCAAAGAACAGCTGCTCAAGTATGGGGAAGGGGAGATTCCATTAAAAGAGATAGCAATAAAACTGGGAAGTTGTGGCACGAGGAGCACTATT GCTTTGGCTGTGACAAGAAATGGAGAAGTTAGCTTTGATGAGAGTTACTTGGAAGATGGGACATGGAAGGATAAGACTATGAAATACTGA
AA sequence Show only first row Show all	>Lus10012254 pacid=23172686 polypeptide=Lus10012254 locus=Lus10012254.g ID=Lus10012254.BGIv1.0 annot-version=v1.0 MKKCGTRTIGGKGRQLQSELTLEWIKLLRNCDNRLTAVLTQYVCYININESVSMPDLEIGGRDELAGGTYGWLAPEEAESLSSLMFWSSMKALMPTPEAS SLSFSSSCKSPREFVEGLVKGIHQYNGFNLIVSDISSNAMVCDVSTGLHVLSNANLDSPWPKVQKLGLGSKEQLLKYGEGEIPLKEIAIKLGSCGTRSTI ALAVTRNGEVSFDESYLEDGTWKDKTMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10012254 [exp]	0	1
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	5.0	0.6060
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	12.3	0.5692
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10017263 [exp]	20.0	0.5674
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	62.4	0.4900
					Lus10018519 [exp]	68.3	0.5053
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	81.1	0.4909
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	104.9	0.4667
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10012237 [exp]	113.1	0.4482
AT5G01130			Protein of unknown function (D...		Lus10003164 [exp]	122.7	0.4553
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10025150 [exp]	128.3	0.4607

Compare expression of checked genes

Lus10012254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.