Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37420 405 / 9e-135 Domain of unknown function (DUF23) (.1) AT5G40720 252 / 5e-76 Domain of unknown function (DUF23) (.1) AT3G27330 251 / 4e-73 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G27200 243 / 1e-72 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016022 [exp] 840 / 0 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10013221 [exp] 570 / 0 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 385 / 3e-128 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 261 / 2e-79 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 261 / 3e-79 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 246 / 8e-74 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013291 [exp] 246 / 9e-74 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10030815 [exp] 246 / 1e-73 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 239 / 3e-71 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252100 [exp] 504 / 5e-173 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 251 / 2e-75 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 240 / 3e-71 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 232 / 1e-68 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10012255 pacid=23172693 polypeptide=Lus10012255 locus=Lus10012255.g ID=Lus10012255.BGIv1.0 annot-version=v1.0 ATGAAGGCTCCTCCTCGCCTTCTTCCTCTTCTTCTTCCTCTTCCCGCCGTCAATTCCTTTCACTTCCTCCACCGTCTCCCTGAGTCCATGCGCGCTCTCC TCCTCTTCCTCTTCCTCCTCTTTTCCATCTTCATCCTCCTTTCCATCTCCCCTTATTCCTCCCCCAGCCGTAAGTTCTTCTATAGCGGCGCCAACTTCAC CGCCGCCACTGGTTCCACCGTCGTAGCCGCTCTCCCCAGTTATGCCGTCCGAGAAGAGACTGAGCGGCTCATCAGTACTGAACTAATGAATTCGACCTCA ATTGATCATACTCCTGCAGCGCCTTCTCCCGCTGGCCGCCGTGGAGATTATCTGATCGAATCCACTTCGATTCTGTTCCCTGATTGGCAAGTTCTCGTGA TCGTCTCCAGCGATATCATTATTCAGTCGATTTCAGGTGGGGAGGAATTTCTGTGCCTCTATCCAAATAGAGCGAGTTCGCCAGCGAGATTCTCTGGAGT TCTTTCGTCGACGAATCAGTCGATTTTCAAGTGCTTGCTGCCGGAGAGGTGTCGGCGGCAGAAGGAGATGAAACAGCCGGTGCTGGTGAGATTTTATTTT CCGTCCTCGGTAGCATCTTTTCCTCATCCGGCGGAATCGCCACGGTGGTTGCTGAGGTGGACGTATCTCGCTTACGAGTCTTTCTCCACTCAATCGGACG TCGTTCTATTCGTTAAAGGAGTCAACAATAAACAAGGATTCAATCGTCCTGTTCACGAGCTGAATTGCGTGTTCTTCAGCAATGAGAACGATGCCGTGAA GACGACAACCACCGCCGTCACAAGCTCGGAGCAAGAGGTTTTCCGTTGCCGTAATCCCGATATGACGGCGTTAGGTCTCAACGCAACGGGAGTCAAAATC TCGCTGGAAATTTCGGAGTCCGGGGTCAACGGGAAAACGATTGTTCCTTCGGTGGCGTACTATACGCCTTCTCGGCAGCGTACGATGGTGGACCTGGCGC AGCAGCCGAAGAAGCTGGAAATCTGCGTCGGGACGATGGTGTACAACGCCGCCAAGTTCCTGAGAGAGTGGGTAATTTATCATTCAGGAATCGGTGTCGA GAAGTTTTTCCTATACGACAACGACAGCGATGACGACATTGAATCAGTAGTCGGAGAGTTGAATCGGGAAGGGTATAAGATTGAGACGGTGCCGTGGATA TGGCCGAAGTCGCAGGAGGCAGGATTCTCCCACTTGGCCGTCTACGCCAAGAGAACGTGCGATTGGATGATGTACATCGACGTGGACGAGTTCGTGTTCT CGCCGCGGTGGAGCTCTGCCGCGCATCCGTTGAATCGGATGCTGAAATCCCTAATTCCGAATCACCGCCGGGTAGGACAGGTTTCGATTCGATGCAACGA ATTCGGGCCTTCGGGTCAGGAATCGCACCCGGAGGAAGGGGTTACGCAAGGTTACGACTGCAGGAGGAAATTCGACAACCGTCACAAGTCGATCGTGCTG CTGGAGGCGGTCGACTACTCGCTGATGAACGCAGTGCACCATTTCCGGCTCGGCGGCGGAGGGGAGTACAAGTGGAAGAAGGTGAAGCTAGAGACGGCGG TGGTGAACCACTACAAGTACCAGGCGTGGTCGGAGTTCAGGGCGAAATTCAGGAGGAGAGTGTCGGCGTACGTAATTGACTGGAAGAAGGCTGTGAATCC TGCGTCAAAGGACGTGGGGTTAGTGTCCGTGTAG
AA sequence Show only first row Show all	>Lus10012255 pacid=23172693 polypeptide=Lus10012255 locus=Lus10012255.g ID=Lus10012255.BGIv1.0 annot-version=v1.0 MKAPPRLLPLLLPLPAVNSFHFLHRLPESMRALLLFLFLLFSIFILLSISPYSSPSRKFFYSGANFTAATGSTVVAALPSYAVREETERLISTELMNSTS IDHTPAAPSPAGRRGDYLIESTSILFPDWQVLVIVSSDIIIQSISGGEEFLCLYPNRASSPARFSGVLSSTNQSIFKCLLPERCRRQKEMKQPVLVRFYF PSSVASFPHPAESPRWLLRWTYLAYESFSTQSDVVLFVKGVNNKQGFNRPVHELNCVFFSNENDAVKTTTTAVTSSEQEVFRCRNPDMTALGLNATGVKI SLEISESGVNGKTIVPSVAYYTPSRQRTMVDLAQQPKKLEICVGTMVYNAAKFLREWVIYHSGIGVEKFFLYDNDSDDDIESVVGELNREGYKIETVPWI WPKSQEAGFSHLAVYAKRTCDWMMYIDVDEFVFSPRWSSAAHPLNRMLKSLIPNHRRVGQVSIRCNEFGPSGQESHPEEGVTQGYDCRRKFDNRHKSIVL LEAVDYSLMNAVHHFRLGGGGEYKWKKVKLETAVVNHYKYQAWSEFRAKFRRRVSAYVIDWKKAVNPASKDVGLVSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37420			Domain of unknown function (DU...		Lus10012255 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	3.2	0.7133
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	6.1	0.7338
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	14.0	0.6835
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	19.3	0.6800
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	20.3	0.6722
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	21.9	0.6553
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	25.0	0.6982
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	32.0	0.6446
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	32.4	0.6344
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	34.1	0.6654

Compare expression of checked genes

Lus10012255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.