Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 471 / 1e-164 Protein kinase superfamily protein (.1) AT2G17220 418 / 1e-144 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G07570 397 / 2e-136 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 394 / 2e-135 APK1B protein kinase 1B (.1.2.3) AT4G35600 394 / 4e-135 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 385 / 4e-132 NAK Protein kinase superfamily protein (.1.2) AT5G15080 371 / 4e-125 Protein kinase superfamily protein (.1) AT2G02800 365 / 1e-123 Kin2, APK2B protein kinase 2B (.1.2) AT3G01300 365 / 4e-123 Protein kinase superfamily protein (.1) AT3G28690 361 / 8e-123 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016020 [exp] 685 / 0 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10030743 [exp] 480 / 5e-169 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10024512 [exp] 434 / 1e-150 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013223 [exp] 421 / 2e-147 AT1G76360 400 / 8e-139 Protein kinase superfamily protein (.1) Lus10008015 [exp] 424 / 1e-146 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 403 / 2e-138 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 401 / 6e-138 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 390 / 9e-134 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 410 / 2e-133 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 491 / 7e-173 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 466 / 9e-163 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.007G062700 [exp] 432 / 8e-150 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 425 / 3e-147 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 413 / 9e-143 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 406 / 7e-140 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G094300 [exp] 387 / 1e-132 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 383 / 4e-131 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 382 / 7e-131 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 379 / 3e-129 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10012256 pacid=23172645 polypeptide=Lus10012256 locus=Lus10012256.g ID=Lus10012256.BGIv1.0 annot-version=v1.0 ATGGGAAACTGCCTCGCAGCTCCTCCGGCAAACCACGACCACAACCCCCACAGCACCACCGCCAGTCCAGTACTCGCAGAAACAACTACTGCGTCAAGCG ACGTCGTTGGGCATATCAACGGATCAGGAAGCGGCATCAGTAACAGAACCGAAACGGCGTCGTCCGGCAACAAGAGTAGTAGCAGTAACGTAATAAAACC GAGCTTGCCGAGCCTGAAGATATTCAAGCTGGTAGAGTTGAAGAGCGCGACGAGGAATTTCAGGCCGGACATGGTGTTAGGGGAAGGCGGGTTCGGGAAG GTATTCAAAGGCTGGATTGACGAGAAGACGTTTGCTCCGTCTAAGGTTTCCGCCGGGTTTCCCGTCGCCGTCAAGCGCTCTAACCCCGGCAGCTCTCAGG GCCTCGAGGAATGGCAGTGTGAAGTGAGGTTTCTGGGAAAATTCTCGCACCCGAATCTGGTGAAGCTGTTGGGTTATTGTTGGGAAGAGAGTCACTTCTT CCTCGTCTATGAATTCATGCAGAAAGGCAGCTTGGAACACCACCTCTTCAAAAAAGGTGCAGAGCCACTACCATGGGAGATCCGCCTTAAGATCGCTATA GGCGCCGCGCAAGGACTGGCTTTCCTCCATTCCTCCGAGAAGAGTGTCATCTACCGCGACTTCAAAGCTTCCAATATTCTCTTAGACAAGGACTTCAACG CCAAGCTTTCGGATTTCGGGCTGGCAAAATTCGGACCAATAAATGGAAAATCTCACGTGACCACCCGGGTCATGGGCACCCACGGGTATGCAGCACCCGA GTATGTGGCGACCGGACACCTGTACGTCAAGTCCGACGTGTATGGGTTCGGAGTCGTACTCCTCGAGATGCTAACGGGCCTACGAACTGTGGACACGAAT CGGCCCAGCGGCGAGTACAAGCTCGTGGAATGGGCCAAGCCTTCTCTGTCCAACAAGAGAAAGCTCAAGAAGCTAATGGACCCAAGACTCGAAGATCAAT ACCCATTAAGCGCTGCGCTGCAAGCGGCCCAGCTGATACTGCAGTGCTTGGAGACCGATCCGAAGACCAGGCCTTCGATGGAGGATGTTTTGGAGAGGTT GATGAAGATAAACGAGATCAATGAGCTTCCTCAGGAGGGAAGACGTGGTGGCAGAGGCCGACGTGGCAGTCAAGGTGTTAATCATGCATACAACCATTCC GGACACGGTGGAAATTTAAATGGGCCTTCAGCCCAATACTCAGGTGGTAGGTAG
AA sequence Show only first row Show all	>Lus10012256 pacid=23172645 polypeptide=Lus10012256 locus=Lus10012256.g ID=Lus10012256.BGIv1.0 annot-version=v1.0 MGNCLAAPPANHDHNPHSTTASPVLAETTTASSDVVGHINGSGSGISNRTETASSGNKSSSSNVIKPSLPSLKIFKLVELKSATRNFRPDMVLGEGGFGK VFKGWIDEKTFAPSKVSAGFPVAVKRSNPGSSQGLEEWQCEVRFLGKFSHPNLVKLLGYCWEESHFFLVYEFMQKGSLEHHLFKKGAEPLPWEIRLKIAI GAAQGLAFLHSSEKSVIYRDFKASNILLDKDFNAKLSDFGLAKFGPINGKSHVTTRVMGTHGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLRTVDTN RPSGEYKLVEWAKPSLSNKRKLKKLMDPRLEDQYPLSAALQAAQLILQCLETDPKTRPSMEDVLERLMKINEINELPQEGRRGGRGRRGSQGVNHAYNHS GHGGNLNGPSAQYSGGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76360			Protein kinase superfamily pro...		Lus10012256 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	2.0	0.9515
					Lus10011653 [exp]	5.0	0.9560
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	5.7	0.9421
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	8.4	0.9414
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	9.0	0.9357
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10033872 [exp]	10.8	0.9120
					Lus10032742 [exp]	11.9	0.9442
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	13.0	0.9194
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	14.4	0.9288
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	14.8	0.9343

Compare expression of checked genes

Lus10012256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.