Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 699 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 692 / 0 NLP4 Plant regulator RWP-RK family protein (.1.2) AT2G17150 430 / 7e-140 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 429 / 3e-137 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35270 428 / 2e-135 NLP2 Plant regulator RWP-RK family protein (.1) AT4G38340 414 / 4e-132 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 417 / 2e-131 NLP7 NIN like protein 7 (.1) AT3G59580 384 / 2e-119 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 382 / 2e-118 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G66990 50 / 4e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016018 [exp] 1625 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 692 / 0 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 684 / 0 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 520 / 2e-172 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 515 / 1e-170 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 425 / 2e-134 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 390 / 3e-121 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 382 / 9e-120 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 381 / 3e-118 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 924 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 909 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 585 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 584 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 562 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 467 / 4e-150 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 450 / 5e-144 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 437 / 2e-138 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 429 / 1e-135 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 392 / 2e-121 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10012257 pacid=23172637 polypeptide=Lus10012257 locus=Lus10012257.g ID=Lus10012257.BGIv1.0 annot-version=v1.0 ATGGATGGTTCTTCTTGGCAATCAGGTATGCTGCTTGGCTCACTGGCGGATACATCTATGGATTTCGATTACATGGATGAGTTACTGCTAGATGGCTGCT GGCTGGAGACAACTGATGGCTCAGACTTCTTTAATCCTGCTCCATCTGATCAATTTACTGCAACTTTCCACCCATCAACTGTACTATCGCCTGCTGTAGA TATCAACAATGTTGATATGTCTGCTGGTACTTCTCAAAGGAACACCGAGGAAGAAAGCAAACAAATGTCGGTGTTCGACAAGGCTGGTGTCTCTGGGAGG GAGAATGATGATGACACAGCTGAAGGTTCTGGTCTCAGCCAAAGGTGGTGGATTGGACCTAAATCAAATCCAATTCCTGGTAGTACAGTGAAGGATAGAT TGGTTGGGGCAATTGGGTCCATTAGAGACTTGATAAAAGATAAGGATGCCCTAATACAGATATGGGTGCCCACGGACAGCAGAATGGGGAGGCGTGTGTT GACAACTTTTGATCAACCTTTTGCAGTTGATGGCAGTTCTCAGAGACTGGCAAACTATAGGGACATTTCTATTAACTATCAGTTCCCAGCTGAAGAGGGT GGTGACTCCAAGGACTTTGCAGGGATGCCTGGTCGTGTTTTCTTGGGTAAAGTTCCTGAGTGGACTCCCGATGTTCGGTTCTTTAGAAATGATGAGTACC CGCGAGTTGATCATGCTCGACAGTATAATGTATGCGGTACGCTGGCTGTTCCAGTGTTTGAGCAACGCAGCAAAGTCTGCTTAGGCGTCATTGAGATTGT TACAACCAGGCAAGAAGTCAAGTATCAATCCGAGCTTGAAAAGATCTCCAAAGCACTCGAGGCTGTTGATCTTAGGAGTTCAGAAACTCCAAGTACACAA AGTATGAAGTCCCGCGATATAGCCTACCAAGATGCATTGCCAGAAATCCAACAGGTGCTGAAATCTGCATGTGAGACTCACAACTTACCCTTAGCTCAGA CTTGGGTTCCATGCATCCAACAAGGAAAAGGCGGTAGTCGACATTCAGATGAGAATTACTTCCACTGTGTCTCAACCGTGGATCAAGCTTGCTTTGTATC AGATCCTCAGATAAAAGGTTTCCATGAGGCTTGCTCAGAACATCACTTGCTGAAGGGTCAAGGGGTGGCGGGGCGAGCTTTTACCACGAACGAGCCTTGC TTCTCGAGTGACATAACTTTGTACAGCAAGACCGAATATCCACTTTCACATCATGCTAGAATGTTTGGGTTATGTGCAGCCGTCGCAATCCGGTTGAGAA GTGTGCACACAGGTGCTGCAGACTTTGTCTTGGAGTTCTTCCTTCCTGCAGACTGCAGGACTCCCGAAGAGCAAGAGAAGATGCTTAATTCGCTTTCTGT CATCATACAACACGTTTGCCAGACCTTAAGGGTCGTAACGGATAAAGAATTAGAGGAGGAGGCGGATTCAGTTGTATTTCCTTCTGTTGATCTCACTGAT GTCATTACTGTTCCATCAGCTGAAAAAGGTATGGAATTGCTGGAGACATCTCCAGATGATAAAAAAAGGAGTATTGAGATTGATGGTGAGTTTAGTGTGG GTGGTTTCTCAAGCACTATTGAAGGTAAACAAGTTGACAGAAAACGAACCAAGGCGGAGAAAAAGATCACACTGGATGTTCTTAGGCAACATTTTGCTGG CAGCTTAAAAGATGCTGCTAAGAGTCTTGGCGTGTGCCCAACAACCCTGAAAAGGATTTGCAGGCAACATGGGATATCTCGATGGCCATCTCGAAAACTA AAGAAGGTTGGTCACTCATTGCAGAAGCTTCAAGTTGTGATGGACTCAGTTCAAGGCGCCTCTGGTGCTTTACATATCCACTCCTTCTACACAAACTTCC CCGAGCTGGGTTCTCCACAAGGTTCTAAAAGTTGCAGCCCCTTGCCAGTTTCAAAGCTAGACCATAATCCAGAAGAACCATCAGCCACACTGCTTAATGC TACAGTTAAATCAACTTCTTCTTCGTCGTGCAGTCAAGGTTCTAGCTCAAGCCATTCACTTTCCAGCGGATCACAACAGCAGCAACAGTCAGCCACCGAG TTCGCTGTACTCGGAGAAGAATCGGAACACAAACCCTTGGTCGACCAATCGGCTACGAATGGTTTAGTGAAAAGGGTCAGAAGTGAAGCTGAGCTTCGCA TCTCTGGTGAAGTAGAAGCAGCAGCAGCCAAAGTGACTCTTCCAAGAGCTCAGAGTCATCAGTCTCTGGCCGACGAACAGGCTAACTTGGGGAACCGAAT TCATCAGTTGGCGAAATCTGGCACCCAGGTCCCGAAATGGAATGCTGCAGATGCTCAAAGGGTGAAAGTAGCGTATGGGAACGAGATAGTCAGGTTCCGG ATGTCGAAAAACTGGGGATTCACAGACTTGTTGCTCGAGATTTCGAGGCGGTTTGGCATAGAGGACATTAGTAGATTCGATGTGAAGTACTTGGATGACG ACTCGGAGTGGGTTCTGTTAACTTGCGACGAAGATGTCGAGGAATGTGTGGAAGTTTGCAGAGGTTCGCAGAGCCAGACTATCAAGCTTTTGCTTCAGGT TTCTTCTCGCTGCCTTTCATGA
AA sequence Show only first row Show all	>Lus10012257 pacid=23172637 polypeptide=Lus10012257 locus=Lus10012257.g ID=Lus10012257.BGIv1.0 annot-version=v1.0 MDGSSWQSGMLLGSLADTSMDFDYMDELLLDGCWLETTDGSDFFNPAPSDQFTATFHPSTVLSPAVDINNVDMSAGTSQRNTEEESKQMSVFDKAGVSGR ENDDDTAEGSGLSQRWWIGPKSNPIPGSTVKDRLVGAIGSIRDLIKDKDALIQIWVPTDSRMGRRVLTTFDQPFAVDGSSQRLANYRDISINYQFPAEEG GDSKDFAGMPGRVFLGKVPEWTPDVRFFRNDEYPRVDHARQYNVCGTLAVPVFEQRSKVCLGVIEIVTTRQEVKYQSELEKISKALEAVDLRSSETPSTQ SMKSRDIAYQDALPEIQQVLKSACETHNLPLAQTWVPCIQQGKGGSRHSDENYFHCVSTVDQACFVSDPQIKGFHEACSEHHLLKGQGVAGRAFTTNEPC FSSDITLYSKTEYPLSHHARMFGLCAAVAIRLRSVHTGAADFVLEFFLPADCRTPEEQEKMLNSLSVIIQHVCQTLRVVTDKELEEEADSVVFPSVDLTD VITVPSAEKGMELLETSPDDKKRSIEIDGEFSVGGFSSTIEGKQVDRKRTKAEKKITLDVLRQHFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKL KKVGHSLQKLQVVMDSVQGASGALHIHSFYTNFPELGSPQGSKSCSPLPVSKLDHNPEEPSATLLNATVKSTSSSSCSQGSSSSHSLSSGSQQQQQSATE FAVLGEESEHKPLVDQSATNGLVKRVRSEAELRISGEVEAAAAKVTLPRAQSHQSLADEQANLGNRIHQLAKSGTQVPKWNAADAQRVKVAYGNEIVRFR MSKNWGFTDLLLEISRRFGIEDISRFDVKYLDDDSEWVLLTCDEDVEECVEVCRGSQSQTIKLLLQVSSRCLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	0	1
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	2.8	0.8445
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	4.0	0.8293
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	10.1	0.7975
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	11.9	0.8327
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	12.8	0.8256
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	13.0	0.8148
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	14.9	0.8390
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	16.1	0.8188
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	17.7	0.8173
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10019432 [exp]	20.8	0.8006

Compare expression of checked genes

Lus10012257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.