Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35090 945 / 0 CAT2 catalase 2 (.1.2) AT1G20630 916 / 0 CAT1 catalase 1 (.1) AT1G20620 840 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030745 [exp] 991 / 0 AT4G35090 947 / 0.0 catalase 2 (.1.2) Lus10013225 [exp] 990 / 0 AT4G35090 942 / 0.0 catalase 2 (.1.2) Lus10016017 [exp] 885 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009800 [exp] 976 / 0 AT4G35090 960 / 0.0 catalase 2 (.1.2) Potri.005G251600 [exp] 966 / 0 AT4G35090 944 / 0.0 catalase 2 (.1.2) Potri.005G100400 [exp] 942 / 0 AT4G35090 958 / 0.0 catalase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06628 [flax] [poplar] Catalase-rel Catalase-related immune-responsive PF00199 [flax] [poplar] Catalase Catalase
Representative CDS sequence Show only first row Show all	>Lus10012258 pacid=23172676 polypeptide=Lus10012258 locus=Lus10012258.g ID=Lus10012258.BGIv1.0 annot-version=v1.0 ATGGATCCGTACAAGCATCGTCCTTCCAGTGCTTTCAACTCTCCTTTCTGGACTACCAACTCCGGCGCTCCAGTATGGAACAACAACTCTTCCATGACTG TTGGAGCTAGAGGTCCGATTCTCCTTGAGGATTATCATTTGGTGGAGAAGATAGCCAACTTCGATAGGGAGCGCATTCCAGAGCGTGTTGTCCACGCCAG GGGAGCAAGTGCAAAGGGTTTCTTTGAAGTCACCCACGATATCTCTAATCTCACTTGTGCTGATTTCCTCCGAGCTCCTGGAGTTCAGACACCCGTGATA GTCAGGTTCTCCACTGTTATCCATGAACGTGGTAGCCCTGAAACTCTGAGAGACCCTAGGGGTTTTGCAGTGAAGTTCTACACCAGAGAGGGAAATTTTG ATATGGTTGGAAACAACTTTCCAGTTTTCTTCATTCGTGATGGAATGAAGTTCCCCGACATGGTACATGCCCTGAAGCCAAATCCTAAATCTCACATTCA GGAGAACTGGAGAATCCTGGATTTCTTCTCCCATCATCCCGAAAGTCTGCACATGTTTTCGTTCCTCTTTGACGATATTGGTATTCCTCAAGATTACAGA CACATGGAGGGTTCTGGCGTTAACACCTATACATTAGTGAGCAAGTCTGGAAAAGCTTACTATGTCAAATTTCACTGGAAACCCACTTGTGGAGTGAAGA GTCTGTTGGAGGATGAGGCGATCAAGGTTGGCGGAGCTAATCACAGCCATGCTACCCAAGATCTCTATGATTCAATTGCAGCTGGAAATTACCCAGAGTG GAAGCTGTTCATCCAGACCATCGATCCTGATCATGAAGATCGATTTGATTTTGACCCACTTGACGTGACCAAGACCTGGCCTGAAGATATCATACCTCTT CAACCAGTTGGTCGCCTGGTCTTAAACAAGAACATTGATAACTTCTTTGCTGAAAATGAGCAGCTTGCATTCTGCCCAGCACTTGTGGTGCCTGGTGTTT ACTATTCAGATGACAAGCTACTTCAGACTCGCATCTTCTCTTACTCTGACACTCAAAGGCACCGTCTTGGACCAAACTATCTGCAGCTCCCTGCTAATTC TCCCAAGTGCTCTCACCACAACAATCATCATGAAGGTTTCATGAATTTCATGCACAGGGATGAAGAGGTCAATTACTTCCCATCAAGGTATGATCCAGTT CGCCATGCTGAGCAATTCCCTGTTCCTCCTCAAGTCTGCACTGGAAAGCGTGAGAAGTGTGTGATAACCAAGGAGAACAACTTCAAGCAACCTGGGGAGA GATACCGCTCATGGCCGGCTGACAGGCAAGAAAGATTCATCTGCCGATGGATCGACGCACTTTCTGATCCCCGCGTCACTCATGAAATCCGCAGTATCTG GATATCATACTGGTCACAGGCTGATCAGTCACTTGGTCAGAAGCTGGCAAACCGTCTCAACGTGAGGCCAAACATTTAA
AA sequence Show only first row Show all	>Lus10012258 pacid=23172676 polypeptide=Lus10012258 locus=Lus10012258.g ID=Lus10012258.BGIv1.0 annot-version=v1.0 MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSMTVGARGPILLEDYHLVEKIANFDRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVI VRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDMVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDIGIPQDYR HMEGSGVNTYTLVSKSGKAYYVKFHWKPTCGVKSLLEDEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL QPVGRLVLNKNIDNFFAENEQLAFCPALVVPGVYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANSPKCSHHNNHHEGFMNFMHRDEEVNYFPSRYDPV RHAEQFPVPPQVCTGKREKCVITKENNFKQPGERYRSWPADRQERFICRWIDALSDPRVTHEIRSIWISYWSQADQSLGQKLANRLNVRPNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	0	1
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	1.0	0.9272
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	2.4	0.8767
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	5.7	0.8278
AT3G14830			unknown protein		Lus10005552 [exp]	6.0	0.8943
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	8.4	0.8522
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	11.0	0.8911
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	11.1	0.8934
AT1G44920			unknown protein		Lus10018656 [exp]	11.4	0.8327
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	11.6	0.8657
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	12.0	0.8393

Compare expression of checked genes

Lus10012258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.