Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42340 676 / 0 PUB15 Plant U-Box 15 (.1) AT3G46510 503 / 5e-171 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 439 / 3e-142 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 424 / 2e-140 ATPUB14 plant U-box 14 (.1) AT1G71020 321 / 1e-102 ARM repeat superfamily protein (.1.2) AT1G23030 325 / 3e-102 PUB11 ARM repeat superfamily protein (.1) AT2G23140 251 / 6e-73 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G29340 246 / 1e-71 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G01400 223 / 1e-66 ARM repeat superfamily protein (.1) AT3G07360 220 / 3e-64 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016016 [exp] 1170 / 0 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 473 / 8e-159 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 468 / 1e-156 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 439 / 3e-146 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 364 / 3e-117 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 357 / 3e-107 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 300 / 3e-92 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 286 / 4e-87 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 272 / 7e-83 AT3G54850 599 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009900 [exp] 783 / 0 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 647 / 0 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 642 / 0 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 487 / 2e-164 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 483 / 6e-163 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 459 / 5e-154 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 454 / 3e-152 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 367 / 2e-118 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 359 / 4e-115 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 266 / 4e-79 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10012260 pacid=23172709 polypeptide=Lus10012260 locus=Lus10012260.g ID=Lus10012260.BGIv1.0 annot-version=v1.0 ATGAACGAGGAGGAAAACGGATCAGGAAGAGGATCATCATCATCCTCAGAGGAAGAGATAGAATCCACGTCTCTGCAGGAGGAAAGTGGAGAAGAATATA TTGTCGAATCCATCCTGAGAGTGATCGAATCGGTTGCGAGGTTCGGAGGGTACAGAGGGACCCACCGGAGGGAATGCATCGCCCTTGTCCGGCGCATGAA AACCTTCCTCCCGTTCCTGGAGGAGGTTCGAGACCTCGAAACGACACCTATTTCGGAGGAAGGGATCGAATGCCTGAAGAACCTGAAGGCTGCGTTCGTC ATGGCCGGAAAGCTTCTCAAAACTTGTAACGAAGGAAGCAAGATTTACCTGGCCGCAGAGAGAGAGGCGGTGACATCGAGATTTCGAGCAGTGCACGAAA AGTTGTTCAGCGTGCTAGAATCAATACCGTACGAGGATCTAGGGATATCGGACGAGGTAAGAGAACAAGTGGACCTAATGAGGAATCAGTTGAAGCGACC AAACAACAGCAGGGACTCGGACGCGCAAGACATGGAGCTGGCGATGGACCTGATGTTCGTGCTGTCGAAGAAAGACGACCAGTCGAATTCGGACAGCGCC ATCATAGAGAGGATAGCGAGGAAGCTGGAGCTCCACGACGTGGAGAACGTGAAGAACGAGACCATAGCGGTGAGGAATTTGGTCCGGGGGAGGGGAGGGA TAGATCACGACGAGACATTGCAACACATGGTTGAGATGCTGAACAAGATGAGGAAGATGGTGGGGTTGGAAGAGAGTTGTGATTTAAATAGTGGTGGTGG TGGTGGTGGTGGTTGTTGTGGTGGGAAGAAATCGCTATCCAAGAGTCCGTCTTTGATCATCCCTCACGAGTTCCTTTGTCCCATTACTCTTGAGATCATG GTGGATCCTGTCATCATTGCTTCTGGTCAGACATACGAAAGGGAGAGCATCCAGAAATGGCTAGACGCAAACCACGTGACATGTCCGAAGACAAGGCAGA CGCTGGAGAACACATCCATCGCACCAAACTACGCCTTGAAGAACCTCATCCAAAATTGGTGCGACAGGCACAAATTCAAGCTTCCCAAGAAAGAGTCAAC CACTACCGCCGCCAGTGCTACCACCGCTGCCGATCCGGACCAATGCAGAAGCATCGACCAAGTCTCCACCTTGGTGGAAGAACTCTCCTCCAGCAACTTG GACGTACAGAGGAGAGCCGTGAAGGAGATCCGGATGCTGTCCAAGGAGAGCCCCGAAAACAGAGTGTCCATTGCGGATTCCGGTGGGATCTCCTCCATCG TTGACTTGCTGGGTTACCCGGATTCCAAGATCCAAGAACACGCCGTGACGGCGCTGCTGAACCTGTCGCTGGATAAGACGAATAAGAGGGCTATAACGGA GGCTGGAGCCATACCTGCTATCGTTGATGTGTTGCAGAGTGGGTCCAGAGAGGCTAAGGAGAACTCTGCTGCTGCTCTCTTCAGCTTGTCCATGTTGGAC GAGAACAAGGTGGCGATCGGGCTCTCCCACGGAATCCCACCGCTCGTCGACCTCCTCCAACGCGGGACAATGAGAGGGAAGAAGGACGCGCTGACGGCGC TGTTCAACCTCTGCCTCAACGACTCGAACAAGGAGAAAGCCATCGAAGCCGGGATTGTGGACCCACTGCTCCAGCTACTAAAAGACCGGAACTTGAACAT GATCGACGAGACCTTATCCATCTTCCTGCTCCTCGCTTCGCACCCGGAAGGAAGGAACGCCGTGGGGCAGCTTCCTTTCATAGAGATGTTGGTGGAGTTT ATGGCGGAGGGGACTCCGAAGAACAAGGAATGTGCCACGTCGGTTCTTCTGGAGCTCGGGTCGGGAAATTCGAACTACATGCTGATGGCGCTCCAATTCG GGGCGTATGAGCATTTGGTGGAGTTGAGTAAGAGCGGGACGGATCGAGGGAAGAGGAAGGCTAATTCTTTGCTTCAGTTGATGAGCAGAACTGAACAGCT TTAA
AA sequence Show only first row Show all	>Lus10012260 pacid=23172709 polypeptide=Lus10012260 locus=Lus10012260.g ID=Lus10012260.BGIv1.0 annot-version=v1.0 MNEEENGSGRGSSSSSEEEIESTSLQEESGEEYIVESILRVIESVARFGGYRGTHRRECIALVRRMKTFLPFLEEVRDLETTPISEEGIECLKNLKAAFV MAGKLLKTCNEGSKIYLAAEREAVTSRFRAVHEKLFSVLESIPYEDLGISDEVREQVDLMRNQLKRPNNSRDSDAQDMELAMDLMFVLSKKDDQSNSDSA IIERIARKLELHDVENVKNETIAVRNLVRGRGGIDHDETLQHMVEMLNKMRKMVGLEESCDLNSGGGGGGGCCGGKKSLSKSPSLIIPHEFLCPITLEIM VDPVIIASGQTYERESIQKWLDANHVTCPKTRQTLENTSIAPNYALKNLIQNWCDRHKFKLPKKESTTTAASATTAADPDQCRSIDQVSTLVEELSSSNL DVQRRAVKEIRMLSKESPENRVSIADSGGISSIVDLLGYPDSKIQEHAVTALLNLSLDKTNKRAITEAGAIPAIVDVLQSGSREAKENSAAALFSLSMLD ENKVAIGLSHGIPPLVDLLQRGTMRGKKDALTALFNLCLNDSNKEKAIEAGIVDPLLQLLKDRNLNMIDETLSIFLLLASHPEGRNAVGQLPFIEMLVEF MAEGTPKNKECATSVLLELGSGNSNYMLMALQFGAYEHLVELSKSGTDRGKRKANSLLQLMSRTEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10012260 [exp]	0	1
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	2.4	0.8015
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	4.9	0.7587
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035625 [exp]	7.9	0.7517
AT1G15170			MATE efflux family protein (.1...		Lus10002200 [exp]	28.0	0.6729
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10035499 [exp]	90.0	0.6928
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10025074 [exp]	90.1	0.6485
					Lus10006648 [exp]	91.9	0.6934
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	144.3	0.6547
					Lus10039418 [exp]	157.9	0.6551
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10021866 [exp]	253.9	0.6514

Compare expression of checked genes

Lus10012260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.