Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76310 434 / 2e-149 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 430 / 4e-148 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 343 / 4e-114 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 341 / 3e-113 CYCB2;1 Cyclin B2;1 (.1) AT1G20590 271 / 5e-89 Cyclin family protein (.1) AT5G06150 272 / 2e-86 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 268 / 4e-85 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT1G16330 255 / 2e-77 CYCB3;1 cyclin b3;1 (.1) AT2G26760 238 / 6e-74 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 235 / 4e-72 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016015 [exp] 543 / 0 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 439 / 9e-152 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 433 / 2e-149 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10036080 [exp] 271 / 3e-86 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 261 / 6e-82 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 242 / 2e-74 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10001765 [exp] 241 / 6e-71 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10003800 [exp] 214 / 5e-64 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10008103 [exp] 208 / 3e-61 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010000 [exp] 461 / 5e-160 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 450 / 6e-156 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 416 / 5e-143 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 416 / 1e-142 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.001G272000 [exp] 274 / 1e-87 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 263 / 4e-83 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.016G033000 [exp] 261 / 9e-82 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 251 / 5e-78 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.010G173200 [exp] 249 / 5e-75 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 233 / 4e-69 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012261 pacid=23172717 polypeptide=Lus10012261 locus=Lus10012261.g ID=Lus10012261.BGIv1.0 annot-version=v1.0 ATGGCCGGATCAGACGAGAACAATCCGGGTATGGTTGGACCCGCCCAGAACATTCAAGGGGGTTTAAGAATGGGAAAGATTCCGTTTGCGCCTGCCGCCG GAAGCAATCGGAGGGCCTTGAGTACCATCAACCGGAATGCAATCGGCGGTCCGGCACACCCATATGATAAGCAATGTGATAAGAAACAACAACCCGTCCA TCGTCCAATCACTAGAAGGTTTGCTGCACAATTAGCCAAGAAGCCTAAACCGGGGGAGTTAACCAAATTAGAAGTGAAGAATGTCAACGAAGACTGTCCA ATCACTGATGCAGAAGATTTCTCTGCACCAATGTTTGTGCAGCATACAGAAGCAATGCTGGTGGAGATTGACCTCATGGAAGAGGTTGAAATGGAGGATG TGGCTGAAGAGGGGGAGGATGACTCAATTGAAGATATAGACAGTTGTGACAAGAAGAACCCTCTTGCTGTGGTTGAATACATTGACGATTTGTACACGTT TTACCGGAAATCTGAGGTTTCGAGTTCTGTTGCACCTAACTACATGGCGCAGCAAGTTGATATCAAGGAGAGGATGAGAGGCATTGAAGCAATGCTGGTG GAGATTGACCTCATGGAAGAGGTTGAAATGGAGGATGTGGCTGAAGAGGGGGAGGATGACTCAATTGAAGATATAGACAGTTGTGACAAGAAGAACCCTC TTGCTGTGGTTGAATACATTGACGATTTGTACACGTTTTACCGGAAATCTGAGGTTTCGAGTTCTGTTGCACCTAACTACATGGCGCAGCAAGTTGATAT CAATGAGAGGATGAGAGGCATTCTTATTGACTGGTTGATTGAGGTGCACTACAAGTTTGAGTTGATGGAGGAGACTCTTTACCTTACGGTGAATCTGATT GACAGATTCTTGGCAATTCATTCAGTTGTGAGAAAGAAGCTACAACTGGTTGGAGTTACAGCCATGCTTCTTGCTTGCAAATATGAAGAAGTCTCGGTTC CTGTTGTGGATGACCTCATCCTGATTTCTGACAAGGCTTACAGTAGAAAAGAAATTCTTGACATGGAGAAGTTGATATGCAATACCTTGAAGTTTAATAT GTCAGTCCCAACTCCTTATGTTTTCATGAGGAGGTTTCTTAAAGCTGCTCAATCTGACAAGAAGTTGGAGCTTCTGTCATTCTTCCTGATCGAGCTGTGC TTAGTTGAGTATGAAATGCTCAAGTATCAACCTTCTTTGCTATCTGCTGCTGCAATCTATACAGCTCAGTGCACCCTGGCTGGGTCTAGCCAGTGGAACA AGACTAACGAGTGGTACACTTGCTACCCAGAAGAGCAGCTTCTGGAATGTTCAAAGTTAATAGTGGGGTTTCATCAGAAGTCTGGGTCAACGAGGCTGAC TGGTGTCCACAGGAAGTACAGCACTTCAAAGTTTGGGTATGCAGCAAGAACTGAACCTGCTAACTTCTTACTGCTCCAGTAG
AA sequence Show only first row Show all	>Lus10012261 pacid=23172717 polypeptide=Lus10012261 locus=Lus10012261.g ID=Lus10012261.BGIv1.0 annot-version=v1.0 MAGSDENNPGMVGPAQNIQGGLRMGKIPFAPAAGSNRRALSTINRNAIGGPAHPYDKQCDKKQQPVHRPITRRFAAQLAKKPKPGELTKLEVKNVNEDCP ITDAEDFSAPMFVQHTEAMLVEIDLMEEVEMEDVAEEGEDDSIEDIDSCDKKNPLAVVEYIDDLYTFYRKSEVSSSVAPNYMAQQVDIKERMRGIEAMLV EIDLMEEVEMEDVAEEGEDDSIEDIDSCDKKNPLAVVEYIDDLYTFYRKSEVSSSVAPNYMAQQVDINERMRGILIDWLIEVHYKFELMEETLYLTVNLI DRFLAIHSVVRKKLQLVGVTAMLLACKYEEVSVPVVDDLILISDKAYSRKEILDMEKLICNTLKFNMSVPTPYVFMRRFLKAAQSDKKLELLSFFLIELC LVEYEMLKYQPSLLSAAAIYTAQCTLAGSSQWNKTNEWYTCYPEEQLLECSKLIVGFHQKSGSTRLTGVHRKYSTSKFGYAARTEPANFLLLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	0	1
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	1.0	0.9756
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	2.8	0.9747
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	3.0	0.9645
AT5G17160			unknown protein		Lus10038036 [exp]	4.5	0.9643
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	8.8	0.9615
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	9.7	0.9637
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	10.6	0.9586
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	11.7	0.9038
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	12.3	0.9573
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	14.1	0.9044

Compare expression of checked genes

Lus10012261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.