Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30600 1056 / 0 BTB/POZ domain-containing protein (.1.2.3.4.5) AT2G46260 49 / 2e-05 BTB/POZ/Kelch-associated protein (.1) AT3G61600 45 / 0.0001 ATPOB1 POZ/BTB containin G-protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016014 [exp] 1514 / 0 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10028744 [exp] 44 / 0.0006 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251300 [exp] 1197 / 0 AT2G30600 1140 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Potri.002G010100 [exp] 1192 / 0 AT2G30600 1110 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Potri.014G093700 [exp] 48 / 3e-05 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.002G166700 [exp] 48 / 3e-05 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 44 / 0.0006 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0202 [flax] [poplar] GBD PF00754 [flax] [poplar] F5_F8_type_C F5/8 type C domain CL0004 [flax] [poplar] Concanavalin PF12248 [flax] [poplar] Methyltransf_FA Farnesoic acid 0-methyl transferase
Representative CDS sequence Show only first row Show all	>Lus10012262 pacid=23172691 polypeptide=Lus10012262 locus=Lus10012262.g ID=Lus10012262.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGGGAAGAAGTTCCTGACGGTAGCTCCATTCCAGTGTGCTTGGAGGAAAGACTTGAAATTCCGGGAAGCTGGAAGAGGGTGCGTCT CTTTTGATGCTTTTGCTCACAATGATGTAACCGTCGTGTTCAGGGAGAATGTTGGCAGCCTGCATTACCATTACAAGAGGGATAACAGCCCTCATTATAC CGTCATTCTGGGGAGCAATCGAAATCGACGGTTGAAGATCGAGGCGGATGGCAAGACTGAGGTTGATGTGGAAGGTATTGGACTTTGCTCCTCTGCTTTC CAGAGCTACTGGATCAGCATCTATGATGGGTTGATCAGTGTTGGCAAAGGAAGGTATCCTTTCCAAAATATAATGTTTCAGTGGCTGCATTCCAATCCGA ATTGCAACGTTCGTTATGTCGGGCTTAGTAGCTGGGATAGGCATGTTGGTTATAGAAATGTCAATGTGTTGCCATTGCCTCATGACCATATGCTGCTGTG GAAGCAAGTTGATTCAGGAGAGTTTGAAAGGAAGGAAGACAGTGAAGACGAGGAGGAGGAGCCGGAATCCAAGGAAATCTCCTATGAGAAATGGGGACTT CGTAATTTCCTCGAAAGCTGGGAACTTTCTGACGTTTTGTTCGTTGTTGGTGTGGACGAGAGACCTGTTCCGGCTCATAAAGTAATTTTGCAAGCTTCGG GTAATTTTCCTTTCTGTTCGTCGCATGAGGATGTCATCCAGCTTAAGACAGTATCTTATCCAGTTATGCATACACTACTTCAATATATCTACACCGGTCG AACTCAGGTTTTAGAGTCGCAAGTTGAGCTGCTGCTGGAGTTGAGCTCACAGTTTGAGGTGATGCCATTGGCAAGGCAGTGTGAAGAACTTCTGGAAAGG TGTAGAGTAAACAAGAAGTTGTTTGGAACCGGTAAGAGTGTAGAGTTGTGCTATCCGAACTCTCGACCCCATTCTTGTACGATGTTTCCTGCGGGATTGC CTGTGAATCAGAGACGGCTCAACGAATTGCATTCAGCCGGTGCGTACAGTGACCTTGATATTTTCATCGAGGGATATGGTCTTGTCGCAAAGATTCATAG AATTGTTATTAGCTTATGGAGTGTTCCATTTGCCAAGATGTTCACAAATGGGATGAGCGAGAGCAGCTCGCCGGAAGTTCATCTAAGGGATGTGCCAGTG GAGGCATTCAAGATAATGCTTGAGTTCATATATAGTGGTGAACTCAATTTGGAAGATGGTGCAGATGCTGGAACCTTGTTACTCCAACTTCTTTTGTTAG CTGACCAATTCGGAGTCACGATCCTCTATCAGGAATGCTGCAAAACGCTTTTAGAATGCCTATCAGAGGACGCAGTGTGTCCAATCCTGCAAGTGGTTTC ATCGATCTCATCTTGTAAACTCATTGAAGAAACCTGCGAGAGAAAGTTCGCCATGCAGTTCGATTACTGCACAACCGCAACCCTCGACTTCATTTTGTTA GATGAGGCAACTTTTACCAATATCATTCAGCATCAAGATCTAACAGTAACATCTGAGGAGAAAGTCCTCAATGCAATTCTGATGTGGTGCATACAAGCCG AAGAGCTGTATGGATGGGAAGCTGTGAATGAACTAATTGCATGCTCAGCCCATGACCTACTTTCCGGACACCGGTCTCAATCATTGAATGACTTGTTACC ATTTGTCCGATTTCCATTGCTCCCTTACAGCATACTTAAAAAGTTGGAGCAGAGCAACCTCTGCAAGCATATCCACATTTTATCTGATCTTGTAAGGGAG GCCATCGGCTATTTGGACCTTGGATTGACTAACAGCAACTTAGGAAAGGATCTCAACCTAAGATTTCAACATAGGCGATCTAGCTACAAGGAACTCCAAT ACATTTGTGATGGAGACAGCAATGGGGTTCTGCATTTTGCTGGCACTTCGTACGGGCAACATCAGTGGGTTAATCCTGTTCTATCAAAGAGAATCTGCAT CACAGCTAGTAGTCCTGCTTCAAGATACACGGACCCTAAGGCTTTAGCATCGAGGTCCTATCAGGGAATGTGCTTTGCTGGACCCCGAATGGAAGATGGC CGAGTATGCTCATGGTGGATGGTTGACCTTGGCCAAGATCATCAGCTTATGTGCAACTATTACACATTAAGACTAGATGGTTCAAGAGCTTTTATAAGAT CTTGGAGACTCCAGGGCTCATTGGATGCTAAGACATGGACAGACTTGAGAGCACACAATGAGGACCAAACAATGAGAAAACCGGGACAGTTTGGGTCATG GCCGGTCACGGGGCCAAACGCGCTGCTGCCTTTCCGATTCTTTAGAGTGGTATTAACCAGCCCTACGACTGATGTATCGAATCCCTGGAACTTGTGCATT TGCTTCTTGGAACTCTACGGTTTCTTCCGTTAA
AA sequence Show only first row Show all	>Lus10012262 pacid=23172691 polypeptide=Lus10012262 locus=Lus10012262.g ID=Lus10012262.BGIv1.0 annot-version=v1.0 MEEEKGKKFLTVAPFQCAWRKDLKFREAGRGCVSFDAFAHNDVTVVFRENVGSLHYHYKRDNSPHYTVILGSNRNRRLKIEADGKTEVDVEGIGLCSSAF QSYWISIYDGLISVGKGRYPFQNIMFQWLHSNPNCNVRYVGLSSWDRHVGYRNVNVLPLPHDHMLLWKQVDSGEFERKEDSEDEEEEPESKEISYEKWGL RNFLESWELSDVLFVVGVDERPVPAHKVILQASGNFPFCSSHEDVIQLKTVSYPVMHTLLQYIYTGRTQVLESQVELLLELSSQFEVMPLARQCEELLER CRVNKKLFGTGKSVELCYPNSRPHSCTMFPAGLPVNQRRLNELHSAGAYSDLDIFIEGYGLVAKIHRIVISLWSVPFAKMFTNGMSESSSPEVHLRDVPV EAFKIMLEFIYSGELNLEDGADAGTLLLQLLLLADQFGVTILYQECCKTLLECLSEDAVCPILQVVSSISSCKLIEETCERKFAMQFDYCTTATLDFILL DEATFTNIIQHQDLTVTSEEKVLNAILMWCIQAEELYGWEAVNELIACSAHDLLSGHRSQSLNDLLPFVRFPLLPYSILKKLEQSNLCKHIHILSDLVRE AIGYLDLGLTNSNLGKDLNLRFQHRRSSYKELQYICDGDSNGVLHFAGTSYGQHQWVNPVLSKRICITASSPASRYTDPKALASRSYQGMCFAGPRMEDG RVCSWWMVDLGQDHQLMCNYYTLRLDGSRAFIRSWRLQGSLDAKTWTDLRAHNEDQTMRKPGQFGSWPVTGPNALLPFRFFRVVLTSPTTDVSNPWNLCI CFLELYGFFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	1.7	0.9424
AT1G27290			unknown protein		Lus10003121 [exp]	2.0	0.9435
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	2.8	0.9403
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	3.5	0.9432
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	5.5	0.9400
AT5G59960			unknown protein		Lus10004947 [exp]	7.2	0.9294
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	8.1	0.9295
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	8.5	0.9382
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	9.8	0.9295
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	9.9	0.9350

Compare expression of checked genes

Lus10012262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.