Plant FIBer expression Database

Lus10012265 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42330 62 / 6e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030749
[exp]
177 / 6e-56 AT5G42330 142 / 2e-42 unknown protein
Lus10013229
[exp]
160 / 2e-49 AT5G42330 139 / 4e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G250800
[exp]
117 / 1e-32 AT5G42330 171 / 5e-54 unknown protein
Potri.002G010400
[exp]
103 / 2e-27 AT5G42330 142 / 2e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10012265 pacid=23172706 polypeptide=Lus10012265 locus=Lus10012265.g ID=Lus10012265.BGIv1.0 annot-version=v1.0
ATGAAGTTCGATCACAAGCCGCCGCTCCCTAAGTCACCCACGCGCCTCCGCTCCCTTCGCGTCCTGCGCTCCAACTCCGCCTCTTTACAGACTCCTACCA
CTGATTCGGCGACCATTATTGGCGGATTGGTGGAGCTCAAGCCAGACTACAGATCCATGTCCTGCGAGTTGAGAGCTCTCTCCACGAAGTTACGCGACGA
GCTCGGAAACCTAGATCCGGAAACGCCTACATTGAAACCGAGCGGTGCCTGTCACGGGGGGAGTTTGGTGCACGAGAGGGGGAGGTTGTACGACGAATAC
TCTGCGATGCGGAACGAGCGGTTGAAGATGAAGAAATTAGGCGCTGGCAGCATCGGAGCAGAGGATTTCTCCAAGACTCTTTACGGAATGAGAGTGACGG
TTAAGTCTTCAGAAAGAAGGGACTCGATGAAGAAGACGGACAGCTCGAGGAAATCGGCGGTGGCATCGGCTAACAGCGGCCTGAAGATAAGTGGAGGCGA
ACCTCCTAGGTACTTGCTGAGGAGTATGTGCAAAGAAAGCAAGCACAGTAAGCCGACGGCGATTCCTCTTCCGCCGCTTGGCTTCGAGAGATCTGCTCTT
CCGTGCGAACGGAGAATTGGTGTCAGGAGATCTGTCAGGAACGTTGGACTCTGA
AA sequence
>Lus10012265 pacid=23172706 polypeptide=Lus10012265 locus=Lus10012265.g ID=Lus10012265.BGIv1.0 annot-version=v1.0
MKFDHKPPLPKSPTRLRSLRVLRSNSASLQTPTTDSATIIGGLVELKPDYRSMSCELRALSTKLRDELGNLDPETPTLKPSGACHGGSLVHERGRLYDEY
SAMRNERLKMKKLGAGSIGAEDFSKTLYGMRVTVKSSERRDSMKKTDSSRKSAVASANSGLKISGGEPPRYLLRSMCKESKHSKPTAIPLPPLGFERSAL
PCERRIGVRRSVRNVGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42330 unknown protein Lus10012265
[exp]
0 1
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10020154
[exp]
12.1 0.8614
AT2G29570 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL... Lus10005874
[exp]
17.3 0.8573
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10026954
[exp]
24.7 0.8561
AT5G47770 FPS1 farnesyl diphosphate synthase ... Lus10041057
[exp]
25.3 0.7877
AT2G40550 ETG1 E2F target gene 1 (.1) Lus10012889
[exp]
31.0 0.8445
AT4G28310 unknown protein Lus10039832
[exp]
38.3 0.8114
AT5G47680 AtTRM, TRM10 tRNA modification 10, unknown ... Lus10039081
[exp]
54.4 0.8005
AT5G54970 unknown protein Lus10043108
[exp]
58.0 0.8208
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10041009
[exp]
67.2 0.8157
AT3G27640 Transducin/WD40 repeat-like su... Lus10032126
[exp]
68.7 0.8174

Lus10012265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.