Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20560 697 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 595 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 493 / 8e-171 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G66120 485 / 2e-167 AMP-dependent synthetase and ligase family protein (.1) AT1G76290 480 / 5e-166 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 469 / 4e-161 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 465 / 2e-159 AAE12 acyl activating enzyme 12 (.1) AT5G16370 463 / 4e-159 AAE5 acyl activating enzyme 5 (.1) AT5G16340 457 / 4e-157 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 437 / 7e-149 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016011 [exp] 899 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 630 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 514 / 2e-178 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 512 / 4e-178 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 500 / 5e-173 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10037735 [exp] 491 / 6e-170 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10010956 [exp] 484 / 6e-167 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10037734 [exp] 483 / 8e-167 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10039161 [exp] 467 / 1e-160 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010600 [exp] 759 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 728 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 638 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 509 / 1e-176 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 507 / 6e-176 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 503 / 4e-175 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 504 / 6e-175 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 504 / 1e-174 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.007G059401 [exp] 499 / 2e-173 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.006G036200 [exp] 495 / 3e-171 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10012266 pacid=23172675 polypeptide=Lus10012266 locus=Lus10012266.g ID=Lus10012266.BGIv1.0 annot-version=v1.0 ATGGAGGGGACCACGAAATGCTCCGCCAATTACGTCCCTCTCACTCCGATCACCTTCCTCGACCGATCGGCCGTCGTCTACGCCCACCGTCCGGCCCTCG TCCACGGCGCCGTCTCTTACACCTGGCTACAACTTCGCAAGAGATGCCTCAGGCTCGCCTCCGCTCTCTCTTCCCTCGGTGTTTCTCGCGGGGATGTGGT TGCTGTTTTGGCCCCAAACATTCCAGCAATTTACGAGCTACATTTTGGTGTTCCAATGGCCGGAGCCGTTCTTTGTACACTGAACACACGCCATGATTCA GCCATGGTTGCTGTCTTGCTGAGACATTCAGAGGCCAAAGTCATCTTCGTTGACCACCAATTGCTCCCCATTGCTCAGGGAGCACTTCAAATCCTCTCCA AGTCAGTGACCAAGCTGCCTCTGCTAGTTATGACCCCGGAGGAGGATGGAACAACATCTCCTAGTTCGTCCTCGTCTGGAATATTGGAATACGAGGGCCT CCTGGCTACGGGGAAGCTGGACTTTGAGGTTAGGCGGCCGAACGATGAATGGGATCCAATCACGCTAAATTATACTTCGGGCACAACATCAAGTCCCAAA GGTGTTGTTTATAGCCATAGGGGTGCCTACCTGAACTCTCTTGCCGCTGCGTTTCTAAACGAGATGGGATCTATGCCTGTATATCTGTGGTGTGTCCCGA TGTTTCATTGCAATGGTTGGTGCCTCACCTGGGCTGTTGCTGCCATGGGAGGCACCAACATCTGCCTTCGAAACGTACTTTACAAGATGGAAGAACTAGG ATTCAATGTAACCCATTCCTACGGCCTGACGGAAACCTATGGTCCTGGGACTGTCTGCACCTGGAAACCCGAATGGTCGTCCCTCCCTCGAGATCAACAA GCCAAGATCAAATCGCGCCAAGGAGTGCAGCACCTCGGCATGGAGGACATTGACGTAAAAGATCCGGTAACCATGAAGAGTGTCCCCTCGGATGCAAGAA CGATGGGGGAGGTTATGTTCAGAGGCAACACGGTGATGAACGGTTACTTCAAGAACAAGGAAGCTACAGAGGAAGCATTCAAAGGGGGATGGTTAAGAAG TGGCGACTTGGGAGTGAAGCATCCGGACGGATACATAGAGCTGAAGGACAGATCGAAGGATATAATAATCTCCGGAGGAGAGAACATCAGCACCATCGAG GTAGAATCGGTGCTGTTTAATCATCCGGCAGTTCTTGAGGCTGCCATTGTAGGAAGGCCGGACGAGCACTGGGGGGAGGCGGTTTGTGCTTTCGTGAAGC TGAAGCAAGGTTGCAGTGCCAGTGGCGAAGAGCTGATTCGGTACTGTAGGGATCACCTGCCGCATTACATGGCTCCGAGGAGCGTGGTGTTTGAGGAGGA TCTACCGAAGACCTCGACTGGGAAGATACAGAAATATGTGCTGAGAGAGAAGGCAAAGGCGATGGGAGGGATGTCGAAACAGAGGAGCAGCAAACTGTAA
AA sequence Show only first row Show all	>Lus10012266 pacid=23172675 polypeptide=Lus10012266 locus=Lus10012266.g ID=Lus10012266.BGIv1.0 annot-version=v1.0 MEGTTKCSANYVPLTPITFLDRSAVVYAHRPALVHGAVSYTWLQLRKRCLRLASALSSLGVSRGDVVAVLAPNIPAIYELHFGVPMAGAVLCTLNTRHDS AMVAVLLRHSEAKVIFVDHQLLPIAQGALQILSKSVTKLPLLVMTPEEDGTTSPSSSSSGILEYEGLLATGKLDFEVRRPNDEWDPITLNYTSGTTSSPK GVVYSHRGAYLNSLAAAFLNEMGSMPVYLWCVPMFHCNGWCLTWAVAAMGGTNICLRNVLYKMEELGFNVTHSYGLTETYGPGTVCTWKPEWSSLPRDQQ AKIKSRQGVQHLGMEDIDVKDPVTMKSVPSDARTMGEVMFRGNTVMNGYFKNKEATEEAFKGGWLRSGDLGVKHPDGYIELKDRSKDIIISGGENISTIE VESVLFNHPAVLEAAIVGRPDEHWGEAVCAFVKLKQGCSASGEELIRYCRDHLPHYMAPRSVVFEEDLPKTSTGKIQKYVLREKAKAMGGMSKQRSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10012266 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	1.0	0.9161
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	4.2	0.8701
					Lus10028788 [exp]	7.7	0.8623
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10042332 [exp]	12.2	0.7901
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	12.7	0.8679
					Lus10002344 [exp]	14.9	0.8157
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	15.9	0.8172
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	16.7	0.8546
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	16.9	0.8124
					Lus10007009 [exp]	17.9	0.8383

Compare expression of checked genes

Lus10012266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.