Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42320 549 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016010 [exp] 712 / 0 AT5G42320 611 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010800 [exp] 603 / 0 AT5G42320 607 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.005G250300 [exp] 576 / 0 AT5G42320 606 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00246 [flax] [poplar] Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10012267 pacid=23172692 polypeptide=Lus10012267 locus=Lus10012267.g ID=Lus10012267.BGIv1.0 annot-version=v1.0 ATGGAGACAATTACTAACGGAAACAAAGGCTACCAAGCTAAGATCAACGTAGTTACTTACTCCAGAAGTCCCCCGTCCACTACTGACACTGATGACAGGT CCAAGTTCCGTATCCTTCTGAGTTTTGGGCAGCATGGAAGAGAGCTCGTCACCACAGAGCTCGCGCTCCGGATCTTATCCATCTTAAGTGAAGAACAGTT CCTACCGAATTTTGAACGCCACGCCTTCAACAACACCCTAGACAAGCTGGTCATCAAGGTGGTACCAATGGAGAATCTGAATGGCCGCAAACTTGTCGAG CAAGGAGATCTTTGTGAGAGGCGAAACGGAAGAGGCGTCGATCTGAACAGGAATTGGAGCGTCGATTGGGGTAAAAAAGAGAAGGACTATGATCCTTATG AAGAGAATCCAGGGCCTGGTCCTTTCAGCGAACCTGAAACTCAAATAATGCGGAAACTTGCCTTATCTTTCGATCCTCATGTTTGGATTAATGTGCATTC TGGAATGGAGGCTTTGTTCATGCCTTATGATCACAAGAACACTACCCCCGATGGATCAGCTTCTCAACAGATGAGGTCTCTGCTTAACGAAGTGAACGAA GATCACTGCTACAGCCGTTGCATGGTTGGATCTGGAGGGGGCTCTGTAGGGTATCTTGCACATGGAACTGCAACAGATTACATGTACGATGTTGTGAAAG TGCCCATGGCTTTCACCTTTGAGATGTATGGGGACTCCACAGCTTCACCAAAGGACTGTTTCAAAATGTTCAATCCTACAGATCACGCTACCTTCAATAG AGTGCTCAATGATTGGTCGGCTGCTTTCTTCACAATATTTAAATTGGGACCAAACCACATGGATGAAGGCCGCAATTCGAAAGCGGCAGCATCCAGCCAG GACAAGTGGGTATCCATCGACGAATATCTCGACGGCTACTTGATGGAGAGAAGGAATAGATATGGGAAGAAGATAGAGGTGTTGGATCTAGGAATGCAGG AGATAAGAACATATTTTAGGCTCTTCTTGTTATCCTCAGTCCTATTGTTGTTCATGTTTTGTTCTAGAATTTCCAAGACCATGTCTAGCAGACCTATTGT TGCAGCTATACCTCTCTAA
AA sequence Show only first row Show all	>Lus10012267 pacid=23172692 polypeptide=Lus10012267 locus=Lus10012267.g ID=Lus10012267.BGIv1.0 annot-version=v1.0 METITNGNKGYQAKINVVTYSRSPPSTTDTDDRSKFRILLSFGQHGRELVTTELALRILSILSEEQFLPNFERHAFNNTLDKLVIKVVPMENLNGRKLVE QGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGPGPFSEPETQIMRKLALSFDPHVWINVHSGMEALFMPYDHKNTTPDGSASQQMRSLLNEVNE DHCYSRCMVGSGGGSVGYLAHGTATDYMYDVVKVPMAFTFEMYGDSTASPKDCFKMFNPTDHATFNRVLNDWSAAFFTIFKLGPNHMDEGRNSKAAASSQ DKWVSIDEYLDGYLMERRNRYGKKIEVLDLGMQEIRTYFRLFLLSSVLLLFMFCSRISKTMSSRPIVAAIPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	0	1
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10033945 [exp]	5.0	0.8631
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	5.7	0.9104
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	5.8	0.9049
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	9.0	0.9009
AT2G17080			Arabidopsis protein of unknown...		Lus10023952 [exp]	10.7	0.8480
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	11.4	0.8990
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	12.2	0.8968
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	13.7	0.8999
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	14.2	0.8957
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	17.3	0.8873

Compare expression of checked genes

Lus10012267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.