Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42310 884 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 190 / 8e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 190 / 2e-50 GUN1 genomes uncoupled 1 (.1) AT5G01110 188 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 185 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 187 / 9e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 186 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 181 / 2e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 183 / 4e-48 PGR3 proton gradient regulation 3 (.1) AT5G12100 182 / 4e-48 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016009 [exp] 1268 / 0 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013283 [exp] 201 / 3e-55 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10023863 [exp] 202 / 4e-55 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013894 [exp] 198 / 3e-53 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 194 / 2e-52 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009465 [exp] 189 / 1e-50 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003424 [exp] 186 / 6e-49 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026558 [exp] 184 / 2e-48 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 183 / 2e-48 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250200 [exp] 985 / 0 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G010900 [exp] 945 / 0 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 201 / 2e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 200 / 8e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 189 / 2e-51 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G297300 [exp] 191 / 4e-51 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 190 / 4e-51 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 187 / 8e-51 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 186 / 2e-50 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 189 / 3e-50 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012268 pacid=23172640 polypeptide=Lus10012268 locus=Lus10012268.g ID=Lus10012268.BGIv1.0 annot-version=v1.0 ATGCTCCGGTTACCACCGCCACTTCTTCCGATTGTATTTCCTTCTAACTCTCCGACCTACTATCCAATCCTCCGCCACCATCTTCTCTCTCCGCCGCTTC ACTCCACCACCTCCGCCTCAGCAGCTCTTACCACAACCACTAGTTTTCGCGACTCCTTTTCCAGTGAAAGTCTGGATAAGGATGAAGAAGACGATAGCGA GAACGAGTACGAGGACGAAGACGACATTCTTCCACTTCAGAGCCGTCGCTACGACTTCACTCCGCTTCTCAGTTTCCTCTCCGGCCAGCTGTCCGAAGCA TCCTCTGGCACCTCCCGCCCCGATTCCAATTCCGATTCCGACGTCTCCGGATCCCCGAGCGTGCTCGACTCGACAGAGTTCCAGCTCGCCGAGTTGTACC GCGCTGTGCCAGGTCCGTTATGGCATTCCTTCTTGAAATCTCTTTGCTCTTCTCCCGATTCGATTGGATTGGCCTACGCAGTCGTTAGGTGGCTTCAGAA GCACAACCTGTGCTTCTCTTACGAACTGCTTTACTCTATTCTCATCCATGCGCTTGGACGCTCGGAGATGCTATACGAGGCTTTCTTGCTCTCGCAGAAG CAAGCTCTGAATCCCCTGACGTACAATGCGCTCATTAATGCTTGTGTGAGAAACAACGATGTTGAGAAAGCGCTCAATTTGATTTCCAGGATGCGGCAGG ACGGTTATCCGTCTGATTTCATCAACTACAGCTTGATTATTAAGAATCTTACGCGGAACAATATCATAGATTGTCAGATTTTGGAGAAGGTTTATGAGGA GATTGAGTGTGATAAGCTTGAGCTGGATGTGCAGCTGTCCAATGACATGATTGTTGGTTTTGCAAAGGCTGGCGATACTAGTAGAGCTATGGAGTTTCTT GCAACAGTTCAAGGAAATGGACTGAGCGTTAAAACTGGGACGCTGGTGGCGGTTATATATGCTTTGGGGAAATCTGGTAGGATTTTGGAAGCTGAGGCTA TTTTTGAAGAAATGAAAGACAATGGCTGGCAACCAAGGACTCGAGCTTATAATGCATTGCTCAAAGGGTATGGAAAAGCTGGTTTACTTAAAGATGCAGA ATTCATTGTCTCGGAGATGGAGAAGAATGGGGTTGCACCTGATGAACAGACATTCGGCTTTCTGGTTGATGCTTATGCAAATGCTGGTAGGTGGGTAAGT GCGAGAATTGTACATAAGGAAATGAAAGCGAGAAATCTGAAGCCTAATCCGTATGTTTACAGTAGAATCTTGTCTTCTTACCGTGATAGAGGGGAATGGC ATAAGTCGTTTCAGGTTTTGAGGGATATGAATGACGTTGGAGTGAAACCGGACAGGTACTTCTACAATGTCTTGATCGATACCTTTGGAAAATTCAATTG TCTGGATCATGCAATGACTGCTTTTGAAAGAATGCTGTCTGAGGGGATACAACCTGATACAATCACTTGGAATACTCTTCTAGATTGCCATTCTAAGGCT GGACTTCATGATAAAGCAGAGGAGTTGTTTGAAGAAATGATGGAAAAAGGTTATTCTCCTTGTGCTGCAACCTTTAACATCATGGTAAATTCATTTGGAC AGCAGGAGAGGTGGGATGATGTGAAGATTTTGCTGCAGAGAATGCAAGGTCATGGTTTATTGCTTAATGCGGTAACATACACCACACTAGTAGATATATA CGGCCGGTCGGGGAGGTTTGATGATGCAATGGAATGCTTGGAAAACATGAAATCTTCAGGATTTAAACCCACGCCTACTATGTACAACGCGTTGATAAAT GCCTACGCACAAAAGGGATTGTCTGAAGAAGCTGTGAATGCATTTAAGATCATGACATCTGACGGCCTAAAGCCTAGTCTCCTAGCTCTCAACTCACTGA TCAATGCATTTGGAGAGGATAGGAGAGACGCAGAAGCTTTTGCAGTGCTGAAGTACATGAAGGACAATGACTTGAAGGCTGATGTTGTGACTTATACCAC TCTAATGAAGGCTTTGATTCGTTCTGATAAATTCGACAAGGTGGCTTCTGTCTATGAAGAAATGATTTCATCTGGTTGCACGCCAGATGGTAAAGCTAAA GCAATGCTAAGATCTGCGCTGAGGTACTTGAAGCAAACACTGTGA
AA sequence Show only first row Show all	>Lus10012268 pacid=23172640 polypeptide=Lus10012268 locus=Lus10012268.g ID=Lus10012268.BGIv1.0 annot-version=v1.0 MLRLPPPLLPIVFPSNSPTYYPILRHHLLSPPLHSTTSASAALTTTTSFRDSFSSESLDKDEEDDSENEYEDEDDILPLQSRRYDFTPLLSFLSGQLSEA SSGTSRPDSNSDSDVSGSPSVLDSTEFQLAELYRAVPGPLWHSFLKSLCSSPDSIGLAYAVVRWLQKHNLCFSYELLYSILIHALGRSEMLYEAFLLSQK QALNPLTYNALINACVRNNDVEKALNLISRMRQDGYPSDFINYSLIIKNLTRNNIIDCQILEKVYEEIECDKLELDVQLSNDMIVGFAKAGDTSRAMEFL ATVQGNGLSVKTGTLVAVIYALGKSGRILEAEAIFEEMKDNGWQPRTRAYNALLKGYGKAGLLKDAEFIVSEMEKNGVAPDEQTFGFLVDAYANAGRWVS ARIVHKEMKARNLKPNPYVYSRILSSYRDRGEWHKSFQVLRDMNDVGVKPDRYFYNVLIDTFGKFNCLDHAMTAFERMLSEGIQPDTITWNTLLDCHSKA GLHDKAEELFEEMMEKGYSPCAATFNIMVNSFGQQERWDDVKILLQRMQGHGLLLNAVTYTTLVDIYGRSGRFDDAMECLENMKSSGFKPTPTMYNALIN AYAQKGLSEEAVNAFKIMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLKYMKDNDLKADVVTYTTLMKALIRSDKFDKVASVYEEMISSGCTPDGKAK AMLRSALRYLKQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	0	1
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	1.7	0.9313
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	2.2	0.9441
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	4.5	0.9350
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	5.7	0.9290
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	11.2	0.9207
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	11.6	0.8999
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10013439 [exp]	12.8	0.8849
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	13.4	0.9145
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	14.0	0.9209
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	14.6	0.8641

Compare expression of checked genes

Lus10012268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.