Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76270 741 / 0 O-fucosyltransferase family protein (.1) AT1G20550 727 / 0 O-fucosyltransferase family protein (.1) AT4G38390 653 / 0 RHS17 root hair specific 17 (.1) AT4G16650 534 / 0 O-fucosyltransferase family protein (.1) AT5G15740 306 / 1e-97 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 305 / 4e-97 O-fucosyltransferase family protein (.1) AT2G03280 304 / 5e-97 O-fucosyltransferase family protein (.1.2) AT1G35510 306 / 7e-97 O-fucosyltransferase family protein (.1) AT5G64600 301 / 1e-95 O-fucosyltransferase family protein (.1) AT1G14020 300 / 2e-95 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013234 [exp] 895 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 887 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 696 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 645 / 0 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 535 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 535 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 529 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 527 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 310 / 4e-98 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249900 [exp] 835 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 813 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 678 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 660 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 547 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 542 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 315 / 6e-100 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 307 / 6e-98 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 306 / 9e-98 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 308 / 2e-97 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012270 pacid=23172668 polypeptide=Lus10012270 locus=Lus10012270.g ID=Lus10012270.BGIv1.0 annot-version=v1.0 ATGGCGGGTCACAGGCGGCGCCGCATCTATTACTACAATCACCTCCGCTCTCCGCGTCCTTTGATCTCCGCCATTTCTGGATTTCTTCTCATTTTCTTCG CCGTCTTCCACTTCCTCGCTCCCTCCCCTAACGGGTCTGGTGACATGTACGAAAGCCTGAATGTTATCGTCGACAACGGCGATCCGCGAGAGGCACAGGT GGCGGCAGAAACACGGCCTGTTTTCCGCGTACCGGATCGTGGTCGAGCCTTGGATCGTGATGTTTGGTGCTCCAGAAATTCCGAATTCTTCTATGGTTGC AGCAACGCTAGCATTAGTTTCCGGAATGCTGATGCTGTTACCAAACCGGATCGGTTTTTGCTTATTGTTACAAGTGGAGGGTTGAATCAACAAAGAACCG GGATCACGGATGCTGTTGTTGCTGCTCGGATTCTGAATGCTACTCTTGTTGTGCCTAAGCTGGACCAGAATTCTTTCTGGAAGGATTCGAGTAACTTCTC CGAGATTTTTGATGTTGACTGGTTTATCTCTTCACTGAAAAATGATGTTAAAATAATAAAGGAACTCCCAAGAAAGCGTGGGAAGACTTGGACTCCCCAT AGTATGCGTGTTGCTAGGAAGTGCAGCGAAAGATGTTATAAGACCCGTGTATTGCCTGCTCTTTTGAAAAGGCATGCAATTCAGCTTGGAAAATTTGATT ACCGGCTTGCAAATAGATTGGATGCCCAGCTTCAGAAGCTGCGATGCCGAGCTAACTACCATGCTTTAAGGTTCACTGATCCAATTCGTAAAATGGGTGA CATGTTGGTTGAAAGAATGAGGATGAAAAGCAAGCATTATATAGCATTGCACCTCAGGTTTGAACCTGATATGTTGGCATTCTCTGGCTGCGATTATGGT GGAGGTGAAAGGGAAATTAAAGATTTGGGTGCCATACGGAAGAGGTGGAAAAATTTACACTTACCGGATCCGGAGAAGGAAAGAAAGCATGGGAAATGCC CACTGACTCCGCACGAAGTTGGTCTTATGTTGAGAGCATTGGGTTACGGCAGGGATGTTCATATCTATGTGGCATCAGGAGAAGTATATCGAGGTGAAGA GACATTGGCACCTCTAAAAGAACTCTTCCCCAACTTCTACACAAAAGAAACTCTCGCACACCAGGACGAGTTGCAACCATTTTCTTCTTTTTCCTCGAGA ATGGCTGCACTCGACTTTATTGTCTGTGACGAAAGCGATGTATTCGTCACAAACAATAATGGCAATATGGCAAAGATATTAGCTGGTCGAAGGAGATATT TTGGGCATAAACCAACGATCCGTCCGAATACTAAGAAGCTTTACAAGCTGTTCTTAAACCAAAACAACATGACATGGGAGCCATTTGCATCGAAAGTTCG TACTTTCCAGAAGGGCTTTATGGGTGAACCGAATGAAGTGCGGCCAGGCAGGGGAGAATTTCACGAGAATCCTCAGACCTGCCTATGCGAGGACTCTGAA GCCAGGGCAAGAAAGGACTCGCCTCCTAGAAAGATTGGGAAAAGCTATAATACAACTTCTTGGGGAGATTCGGACAATCAAAACTCGGACATCGAACCTG ACCTGCCGGATCCAGATACCTATGATGATCAAGATGTCGTGGATGAGACATATTCCTTCAACACAACAGCTTTTGATTACGATGGATTCGACAACTCCTC AGATCACGAGTTCGAGGACCTACTATCCGACTGA
AA sequence Show only first row Show all	>Lus10012270 pacid=23172668 polypeptide=Lus10012270 locus=Lus10012270.g ID=Lus10012270.BGIv1.0 annot-version=v1.0 MAGHRRRRIYYYNHLRSPRPLISAISGFLLIFFAVFHFLAPSPNGSGDMYESLNVIVDNGDPREAQVAAETRPVFRVPDRGRALDRDVWCSRNSEFFYGC SNASISFRNADAVTKPDRFLLIVTSGGLNQQRTGITDAVVAARILNATLVVPKLDQNSFWKDSSNFSEIFDVDWFISSLKNDVKIIKELPRKRGKTWTPH SMRVARKCSERCYKTRVLPALLKRHAIQLGKFDYRLANRLDAQLQKLRCRANYHALRFTDPIRKMGDMLVERMRMKSKHYIALHLRFEPDMLAFSGCDYG GGEREIKDLGAIRKRWKNLHLPDPEKERKHGKCPLTPHEVGLMLRALGYGRDVHIYVASGEVYRGEETLAPLKELFPNFYTKETLAHQDELQPFSSFSSR MAALDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNTKKLYKLFLNQNNMTWEPFASKVRTFQKGFMGEPNEVRPGRGEFHENPQTCLCEDSE ARARKDSPPRKIGKSYNTTSWGDSDNQNSDIEPDLPDPDTYDDQDVVDETYSFNTTAFDYDGFDNSSDHEFEDLLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76270			O-fucosyltransferase family pr...		Lus10012270 [exp]	0	1
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	4.4	0.6467
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10016053 [exp]	26.2	0.5674
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	31.3	0.5848
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	42.5	0.5306
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	52.8	0.5599
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	89.4	0.5079
AT1G17500			ATPase E1-E2 type family prote...		Lus10006017 [exp]	90.7	0.5286
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10016489 [exp]	123.1	0.5037

Compare expression of checked genes

Lus10012270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.