Plant FIBer expression Database

Lus10012273 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19003 323 / 7e-115 VPS25 E2F/DP family winged-helix DNA-binding domain (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016007
[exp]
361 / 9e-130 AT4G19003 324 / 3e-115 E2F/DP family winged-helix DNA-binding domain (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135700
[exp]
334 / 5e-119 AT4G19003 328 / 9e-117 E2F/DP family winged-helix DNA-binding domain (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05871 ESCRT-II ESCRT-II complex subunit
Representative CDS sequence
>Lus10012273 pacid=23172701 polypeptide=Lus10012273 locus=Lus10012273.g ID=Lus10012273.BGIv1.0 annot-version=v1.0
ATGCAGAAATTGGGTGATTTTAAGCTTCCCCATTTCTTTAGTTATCCGCCATACTTCACTTTGCAACCAGTGAGGGACACTCGAGAGAAACAGATCCAAC
TTTGGAAGGAACTCATCATTGACTACTGTAGGACTCACCGGATATTCGTAATTGGATTGGAAGAAGAATTCCCTCTCTTTTCAAACCCTGCCATTGAAAG
ATCTTTGAGTCATGAAGCGAGGGAAGCATTTCTCTCTGCATTGGTATCTGAAGGTCGTGCAGAGTGGTTAGACAAAGGACATAGAAAATGTCTCCTCCTA
TGGCATCGTATTCAAGACTGGGCAGATATTATTGTAACATTTGTCAGAGACAATGGTTTGGAGGATAGTGTGACGACCATTGAAGAAATCCGAACAGGAA
TTGAATCCCGAGGAACAGAGCTTCACGGGATAGATCGAACAATTTTGATGCGAGCATTGAAACTTCTGGAGAGCAAAGGAAAGCTAGCACTGTTTAAGGG
AAGTTCCACAGATGATGAAGGTGTCAAGTTCTCAGTTTAA
AA sequence
>Lus10012273 pacid=23172701 polypeptide=Lus10012273 locus=Lus10012273.g ID=Lus10012273.BGIv1.0 annot-version=v1.0
MQKLGDFKLPHFFSYPPYFTLQPVRDTREKQIQLWKELIIDYCRTHRIFVIGLEEEFPLFSNPAIERSLSHEAREAFLSALVSEGRAEWLDKGHRKCLLL
WHRIQDWADIIVTFVRDNGLEDSVTTIEEIRTGIESRGTELHGIDRTILMRALKLLESKGKLALFKGSSTDDEGVKFSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G19003 VPS25 E2F/DP family winged-helix DNA... Lus10012273
[exp]
0 1
AT2G32760 unknown protein Lus10016662
[exp]
1.7 0.9351
AT2G20140 RPT2b regulatory particle AAA-ATPase... Lus10015524
[exp]
7.9 0.9198
AT2G31800 Integrin-linked protein kinase... Lus10027107
[exp]
8.9 0.9175
AT5G16800 Acyl-CoA N-acyltransferases (N... Lus10013457
[exp]
10.2 0.9153
AT1G63800 UBC5 ubiquitin-conjugating enzyme 5... Lus10032274
[exp]
11.4 0.9243
AT2G44420 protein N-terminal asparagine ... Lus10033495
[exp]
11.6 0.9325
AT3G50210 2-oxoglutarate (2OG) and Fe(II... Lus10006259
[exp]
12.0 0.9335
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10015921
[exp]
16.4 0.9183
AT1G30270 PKS17, ATCIPK23... SNF1-RELATED PROTEIN KINASE 3.... Lus10042816
[exp]
16.7 0.9198
AT1G55680 Transducin/WD40 repeat-like su... Lus10035667
[exp]
17.8 0.9232

Lus10012273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.