Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76250 479 / 2e-168 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016006 [exp] 753 / 0 AT1G76250 483 / 6e-170 unknown protein Lus10008273 [exp] 454 / 4e-159 AT1G76250 374 / 2e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011400 [exp] 490 / 2e-172 AT1G76250 506 / 1e-178 unknown protein Potri.005G249600 [exp] 488 / 9e-172 AT1G76250 493 / 2e-173 unknown protein Potri.012G136700 [exp] 77 / 2e-16 AT1G76250 66 / 3e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012274 pacid=23172638 polypeptide=Lus10012274 locus=Lus10012274.g ID=Lus10012274.BGIv1.0 annot-version=v1.0 ATGATCAGGAAACTCGACGACGGCACTCAGTCTTCATCGCCGATATCAACGAAGCATCTATTCCTCTTCGTATTCCCTCTATTCCTCTTCCTCTTCGTCC TCTTCTTCGTCGTTATCTCCTCCTCCTCCTCATCCACTTTCATCGATCCTCTCTCCGCCATCGCCCCGCTCGCTTCCTATTTCATCGACCTCTCCTCATC CGCCGCTCCCATCCACGATCCGCCTCCGACGAAGGAAGTCCTGGACAGGTCCAGAATCGCGGTGTGTTTGGTAGGAGGAGCGAGGCGGTTCGAGCTCACC GGACCGTCGATCGTGGAAAACGTCCTGAGAGTTTATCCGAACGCCGAGCTGTTCCTCAACAGCCCGCTGGACGACAACTCTTTCAAATTCTCTCTCCTCA AGTCCGCTCCGAGGATCGCGGCCGTTCGGATTTTCCAGCCGAGTTACATCCCGGAAACCGAGTCCAGTATCCGAGTCCTCACCGCCTCCAACTCGCCCAA TGGCATCCAGGGCTTGCTACAGTACTTCAACCTGGTAGAAGGCTGCCTGAACATGATCCGAGACTACCAAACCCGGAACAACTTCACGTACGACTGGATA GTCCGAACCCGAGTAGACTCTTTCTGGTCAGCCCCACTCTCCCCTTCAACCTTCCTCCCTTCAACTTACCTCGTCCCTCAGGGCTCCTCCTACGGCGGCA TCAACGACCGTCTCGGGATCGGAAATTTTGAAACCTCAACCATAGCCCTCTCCAGAATCTCCACCCTCCCAAACCTAGCATCCAACGGCTGCAAAGACCT CAACTCCGAATCCGCATTCAAAGCCCAGCTCGACACCCTCCAAGTCCGCTACTCCGATGAAGGGAGAGTCCCCTTCTGTATATTATCCGACAGGAAGTAC GAATTCCCGCCGGCGGGGGCCACGGTTCCAGTGGCTGCATTGTCCAGTAAGGGCCCGCTCAGCGGTGCCAAATGCAGGCCTTGCACCCCTGCGTGCGAGG GAAAGTGCGTGGGGGAGGTGATGCCGAGCTTGTACAAGACGTGGAGCTGGACGGAGTGGAGGAACGGGTCGTTGAAGCTGTGCGATGCACACGGGGAGTG GGAGAGAGGGTGGGAGAGATTGTTTGATGAGGTTGGTGGGAGGAAGCTGGCTGAAGAGAGGAAGAGGGTGGTTGGGTTGAGTTTTAAGGAATGTGTTGAG GATTTTAGGGCGGTGATGAGGAAAGCTGTGGCTTGGGATTCGCCTACGGTGGAGGAGATTTGTAGGGTTGGGAATTGTGGTCCAGATTAG
AA sequence Show only first row Show all	>Lus10012274 pacid=23172638 polypeptide=Lus10012274 locus=Lus10012274.g ID=Lus10012274.BGIv1.0 annot-version=v1.0 MIRKLDDGTQSSSPISTKHLFLFVFPLFLFLFVLFFVVISSSSSSTFIDPLSAIAPLASYFIDLSSSAAPIHDPPPTKEVLDRSRIAVCLVGGARRFELT GPSIVENVLRVYPNAELFLNSPLDDNSFKFSLLKSAPRIAAVRIFQPSYIPETESSIRVLTASNSPNGIQGLLQYFNLVEGCLNMIRDYQTRNNFTYDWI VRTRVDSFWSAPLSPSTFLPSTYLVPQGSSYGGINDRLGIGNFETSTIALSRISTLPNLASNGCKDLNSESAFKAQLDTLQVRYSDEGRVPFCILSDRKY EFPPAGATVPVAALSSKGPLSGAKCRPCTPACEGKCVGEVMPSLYKTWSWTEWRNGSLKLCDAHGEWERGWERLFDEVGGRKLAEERKRVVGLSFKECVE DFRAVMRKAVAWDSPTVEEICRVGNCGPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76250			unknown protein		Lus10012274 [exp]	0	1
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	2.6	0.9762
					Lus10018742 [exp]	2.8	0.9727
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10024497 [exp]	3.2	0.9722
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	4.2	0.9738
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	4.2	0.9683
					Lus10016571 [exp]	4.5	0.9681
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	5.7	0.9649
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	6.0	0.9640
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	7.5	0.9735
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	8.5	0.9591

Compare expression of checked genes

Lus10012274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.