Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76240 199 / 5e-62 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 65 / 7e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 59 / 4e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 58 / 2e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 58 / 2e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 55 / 1e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 53 / 8e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 50 / 7e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 45 / 4e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51410 44 / 7e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016005 [exp] 376 / 5e-132 AT1G76240 199 / 7e-63 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 69 / 5e-13 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 66 / 4e-12 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041834 [exp] 62 / 5e-11 AT4G35690 140 / 1e-40 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014450 [exp] 61 / 1e-10 AT2G17080 160 / 5e-49 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 61 / 3e-10 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10003332 [exp] 59 / 6e-10 AT4G35200 177 / 3e-55 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 59 / 7e-10 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025121 [exp] 58 / 7e-10 AT2G17080 147 / 6e-44 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011600 [exp] 224 / 5e-72 AT1G76240 295 / 9e-100 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249500 [exp] 219 / 3e-70 AT1G76240 289 / 2e-97 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 74 / 1e-14 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 73 / 1e-14 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 69 / 4e-13 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 67 / 2e-12 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 64 / 2e-11 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 64 / 2e-11 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 61 / 2e-10 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 60 / 5e-10 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10012275 pacid=23172646 polypeptide=Lus10012275 locus=Lus10012275.g ID=Lus10012275.BGIv1.0 annot-version=v1.0 ATGGTAGGCTCATTCATGCGCTCCCTTTCCTTCCCCAACAAGAAACCTCCACCACCGCCGCCGCCAATCTCCCACCACCTCCGATCCATAAGTCTTCCTT CTCGGCCCCACCCTTTAATCTCCCACCTACATTTCCAAATCAACAACCTCCGTCTCTGGTCCACCTCCTCCACCCAATCTCTCAGAGCCAGCTGGCTCTG CGACGGCCTGACTCAGCTCAAAGAAGTCCACGACTACCTGGACGACATCCTCCGCTTCCCTCAAACACAGGAGTCCCTCCGCCGCCACCCGGCCTGGATC GACCACCTCCTCGAAGACTTCCTCCTTTTCGCCGATGCCTACGGAACCTTCCAGAACCTGGCTGCGAAGATGAAGGAGGAGCTCTTCGCGGCGAAAATGG CGGTGAGGAAAAGAGACGAGTGCAAGACGGCGTCGTTTGTGAAGTACCGGAAGAAGTTCGGTAAGGAAATGGGGAAGCTCGTCCAGGCTGTCAGGACGCG GCGTCGTTTTGCGGAGTGCGAGGCCGTTTCGTTGGAGGGTGCTGAGCTGGCGCGCGTTTTGGGGGAGGTGATGGAAGTGACGGTGGAGGTGTCGGAGGTG GTATTCAAGGGGTTTTCGATGAGGAAAACGACGTCGTCGTCGTCGTCTAAATGGATTCGAGGGTTGAGGAGGAGGAGGAGGAGAAGAGCGGTGGATCATG AGGTGGTGGAAAGCGGGATTGAGGAGATTAGTGGAGTGGAGAGGGAGAGGGTGTTGTTCGGGTTGAAGAGGAAGAGCGAGGAAGAGATTCGTGAAGCTGT GAAGAAATTGCAGACATTGGAAGGATGTATTTGTGAGATTGAGAATGGTGGGGAGAGAGTATTTAGGAGCTTGATTAGTACCAGAGTTTCCCTTCTTAAC TGTCTTACTGTTCGCTGA
AA sequence Show only first row Show all	>Lus10012275 pacid=23172646 polypeptide=Lus10012275 locus=Lus10012275.g ID=Lus10012275.BGIv1.0 annot-version=v1.0 MVGSFMRSLSFPNKKPPPPPPPISHHLRSISLPSRPHPLISHLHFQINNLRLWSTSSTQSLRASWLCDGLTQLKEVHDYLDDILRFPQTQESLRRHPAWI DHLLEDFLLFADAYGTFQNLAAKMKEELFAAKMAVRKRDECKTASFVKYRKKFGKEMGKLVQAVRTRRRFAECEAVSLEGAELARVLGEVMEVTVEVSEV VFKGFSMRKTTSSSSSKWIRGLRRRRRRRAVDHEVVESGIEEISGVERERVLFGLKRKSEEEIREAVKKLQTLEGCICEIENGGERVFRSLISTRVSLLN CLTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10040461 [exp]	2.2	0.8784
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	6.0	0.8460
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	6.8	0.8613
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	6.9	0.8460
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	8.2	0.8542
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	8.8	0.8528
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	9.2	0.8528
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	9.9	0.8606
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	10.4	0.8090
AT4G30390			unknown protein		Lus10020378 [exp]	10.9	0.8097

Compare expression of checked genes

Lus10012275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.