Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 204 / 2e-56 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 189 / 2e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 171 / 8e-46 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 164 / 9e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 164 / 1e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 125 / 6e-30 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 122 / 7e-29 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 116 / 7e-27 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G30130 115 / 7e-27 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 112 / 1e-25 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016004 [exp] 905 / 0 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 224 / 1e-63 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 216 / 6e-62 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10029683 [exp] 155 / 1e-39 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 148 / 1e-37 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 142 / 2e-35 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 138 / 4e-34 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 132 / 4e-32 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 128 / 8e-31 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249400 [exp] 342 / 3e-109 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 325 / 7e-103 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 215 / 3e-60 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 214 / 5e-60 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.002G082000 [exp] 158 / 1e-40 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 158 / 1e-40 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 152 / 1e-38 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 139 / 2e-34 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 132 / 3e-32 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 125 / 4e-30 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10012276 pacid=23172702 polypeptide=Lus10012276 locus=Lus10012276.g ID=Lus10012276.BGIv1.0 annot-version=v1.0 ATGGGCTGCAACGCCTCTAAACTCGACAGCTTACCGGCGGTCTCCCTCTGCCACCACCGCTTTCACCTCATCGACGAATCCCTCCGCCACAGCTACTCCT TCGCCGATTCTCACCCCACTTATCTCCACTCCCTCCGCACCTTCCCCACCGCACTCCTCTCTTTCCTCCGCCACAACTCCGCCAGCACCAGCAACAACGA CATCATCATCTCCACCTCCGTTTCTCCGACGACTGCTACAGATGAAAACACTCACAGAAAAAGCGATTCATCTTGCGATCTCAATTTCTCGTCGTCCTCC AGCTCCGATTCCCTGTCCGACGATGACCATAACCACAAGCCGCAGTTCGGCGACAACAACGGTGATTACAATTTCCATCACCCGAAGTACGATTCCTACG GCGGAGGGAGAGGAGATTTGTCGTATTCGTGGAGGACGCCGTCGCCGCCCCAGCCGAGAGCGTCATCCGCCTGGGACTTTTTCAATTTCTTTGACGCGGC TCCTTTCGAGAGGTACGATTTCGCTGAGAAAGACAAGGGAGATGTGAATAAGAACCGCGAAGAGGCGAAATCGATTGTGAAGAAGAAGAAATTGAATGTT GAGAATAAGAGCAAGAAGAGAGAAGAAGCGAAGGATTCGTGTCCTAAGCACGGAAATCCGGCTGAGAAGAAGAAAGTGGAGGAAGAAAAAGAGAAGAAGG AAATCGATATAGGGGCATTGGCGAAGGTAATGGAGGAGGTGGAGGCTTCGTTCCAGAAAGCTGCAGATTCTGGGAACCAAGTGCTGAGCAGATCGTGTAG TTTTCCTGATAATATCAGCGGATTTGATGAAGTTGAGTCTGGGGTTTCTTCGTTGAGTTTGTCTTCAACTCTGAGCAGACTCTGCATGTGGGAGAAGAAA CTCTACGATGAAGTCAAGGCAGAAGAGAAGTTGCGGATGGCGTATGCAAGGTGCTGCAATAAGATTAGGAAAGGCTTAGGTGACACTAGTAAAGTTACTG AGGAAGCAGTAGATGAATCAGTTCGAGCCACGCTCAGAACCCTAGCGAATCAAATCCAGGTCGGGATTCAAGTAATCGACAATATATCAACTAACATCAA CAAATTAAGAGACGACGAGCTCTTTCCCCAGCTAACCGATTTGATCGATAAGTTATTTGGGATGTGGGAATCAATGCTGGAAAGCCACAGATCCCAAGTC CAAGCAGTTTCAGAAGCTCAATCCCGGAACCTCCTCGCCTTGTCGAGTACAAAGCTGAGCGATGCAGGTCTTGAATCAGCAATCCAGCTCAAGATCGAGC TTCAGAGCTTTGCTCTTAGATTCATCTCGTGGATTTCTTCGCAGAAACGATGCGTCAAATCCTTGAACGGCTGGCTATCGAAATGCCTTCTCCCTGACAC ACCTGCAGAAAAGCGAGAGTATCCCCCGGTATTTTCTCTCTGCGACAAATGGTCCACCAGTTTGGATGCTATCTCAGAGACGGAAGTTCTAAACGCCATT CAGTCACTACTCGGGGCACTAAACAAGTTTCTAGAGCAACACCATGTCCATGTTCAAGCACGGATGGCTGCAGACAAGGAAATGGAGAGGAAGATAAAAG CTTTGGACAGGGAAGAACAGAGATTGAGGAAATTGGTACAAGGTCATGGAATTGGCAAGGTGTTGGATCGAAAAACTGATGAAGGTTTCGAGTCCCGTCT GAAGCAGGTTTTCAAGGCGATGGAGAGATTTTCAGCTACTAGTTTTGAAGCTTATCGACAATTCCATGCTACAATGGAATCGGCCCAGAAATCACAGGAG ATGTAG
AA sequence Show only first row Show all	>Lus10012276 pacid=23172702 polypeptide=Lus10012276 locus=Lus10012276.g ID=Lus10012276.BGIv1.0 annot-version=v1.0 MGCNASKLDSLPAVSLCHHRFHLIDESLRHSYSFADSHPTYLHSLRTFPTALLSFLRHNSASTSNNDIIISTSVSPTTATDENTHRKSDSSCDLNFSSSS SSDSLSDDDHNHKPQFGDNNGDYNFHHPKYDSYGGGRGDLSYSWRTPSPPQPRASSAWDFFNFFDAAPFERYDFAEKDKGDVNKNREEAKSIVKKKKLNV ENKSKKREEAKDSCPKHGNPAEKKKVEEEKEKKEIDIGALAKVMEEVEASFQKAADSGNQVLSRSCSFPDNISGFDEVESGVSSLSLSSTLSRLCMWEKK LYDEVKAEEKLRMAYARCCNKIRKGLGDTSKVTEEAVDESVRATLRTLANQIQVGIQVIDNISTNINKLRDDELFPQLTDLIDKLFGMWESMLESHRSQV QAVSEAQSRNLLALSSTKLSDAGLESAIQLKIELQSFALRFISWISSQKRCVKSLNGWLSKCLLPDTPAEKREYPPVFSLCDKWSTSLDAISETEVLNAI QSLLGALNKFLEQHHVHVQARMAADKEMERKIKALDREEQRLRKLVQGHGIGKVLDRKTDEGFESRLKQVFKAMERFSATSFEAYRQFHATMESAQKSQE M

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	0	1
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	2.0	0.9649
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	3.6	0.9467
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	4.2	0.9550
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	4.5	0.9588
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	5.7	0.9607
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	5.8	0.9608
AT5G47530			Auxin-responsive family protei...		Lus10002274 [exp]	6.7	0.9442
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10038223 [exp]	10.8	0.8850
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	10.8	0.9298
					Lus10043485 [exp]	11.2	0.9566

Compare expression of checked genes

Lus10012276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.