Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76210 162 / 1e-49 Arabidopsis protein of unknown function (DUF241) (.1) AT1G20520 129 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 101 / 2e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 88 / 2e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 78 / 1e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 76 / 6e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 73 / 3e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 58 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 55 / 6e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 53 / 4e-08 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016002 [exp] 456 / 9e-165 AT1G76210 164 / 2e-50 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 82 / 3e-18 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 80 / 2e-17 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028380 [exp] 72 / 1e-14 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023957 [exp] 71 / 2e-14 AT2G17080 177 / 2e-55 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041833 [exp] 70 / 6e-14 AT4G35680 130 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023958 [exp] 70 / 6e-14 AT4G35200 193 / 6e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023953 [exp] 70 / 8e-14 AT4G35200 192 / 8e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 66 / 1e-12 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248700 [exp] 241 / 1e-80 AT1G76210 152 / 1e-45 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012600 [exp] 220 / 4e-72 AT1G76210 155 / 5e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 99 / 1e-24 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 87 / 4e-20 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 84 / 7e-19 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 84 / 9e-19 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 81 / 1e-17 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 80 / 1e-17 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 79 / 3e-17 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 79 / 4e-17 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10012278 pacid=23172657 polypeptide=Lus10012278 locus=Lus10012278.g ID=Lus10012278.BGIv1.0 annot-version=v1.0 ATGGCGCTCCCTAACTTCACCGCTCTTCGCGACTTGCACAACTCTGCCAACGACCTCCTGGGCTCACCGGACCTCATCCAGCGAGTAATCATCGGTCACA ACAAGAGCCACGACGATTCCTCCAAATTCCTGTTCCAAGCATCGGAGGCATCTCTCCGAATGCTGGATGTCTGCGGGGTGTCGAGGGACGTTCTTTGCCT GGTTAAAGAACACCTCCTAGGACTCCAATTCACGCTCCGGGGGAGGCGGAGGGTCTCTATCACCGAGTCACCGGACGTGACCATCGGAACTAAAGTCTCG GCCTACAACGACTGCAGGAAGAAGCTGAGGAAAGAAACTAGAAAATGCCTCAAGTCGCTGAGTCAGATGGCAAAGAAAAGTAAGCTGACGACCGTTGATT ACACGGAACACCACGACGGCGGGGGCGGGGATCTCGCCGTAGTGGTGGAGGTGCTGAGCGAAGTGAGGGCGAGTACTGTATCAATTGTCGAGTCGTTGTT GGGGTTGATCTCGATCCCCTGGCTGGATCACCAGAGGCAGAGTAGCAGGAGCAGAGCGACGTCGTTCGCGAGGAAGCTGATACGACGACGTAGCCGGGTT TGTGATCTGCTGTGCGACGAAACAGCACTTGAGACTGCGAATAAAAGATTGGAGGCTGTGGAGATTGCAATCGAGGATCTTGAAGGGGAGCTGGAGTGTA TGGTTCGACGATTGATCCAGACCAGGGCTTCACTTCTTAACATTCTTACTAACTAA
AA sequence Show only first row Show all	>Lus10012278 pacid=23172657 polypeptide=Lus10012278 locus=Lus10012278.g ID=Lus10012278.BGIv1.0 annot-version=v1.0 MALPNFTALRDLHNSANDLLGSPDLIQRVIIGHNKSHDDSSKFLFQASEASLRMLDVCGVSRDVLCLVKEHLLGLQFTLRGRRRVSITESPDVTIGTKVS AYNDCRKKLRKETRKCLKSLSQMAKKSKLTTVDYTEHHDGGGGDLAVVVEVLSEVRASTVSIVESLLGLISIPWLDHQRQSSRSRATSFARKLIRRRSRV CDLLCDETALETANKRLEAVEIAIEDLEGELECMVRRLIQTRASLLNILTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76210			Arabidopsis protein of unknown...		Lus10012278 [exp]	0	1

Compare expression of checked genes

Lus10012278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.