Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 822 / 0 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 711 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 683 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 674 / 0 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 509 / 9e-175 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 460 / 4e-154 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 460 / 7e-154 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 446 / 9e-149 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 354 / 6e-113 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT3G21230 346 / 6e-110 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015998 [exp] 1071 / 0 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 669 / 0 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 461 / 5e-154 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 454 / 2e-151 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 447 / 4e-149 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 445 / 2e-148 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 444 / 6e-148 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 440 / 3e-146 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 432 / 4e-143 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248500 [exp] 858 / 0 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 836 / 0 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 470 / 5e-158 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 463 / 5e-155 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.003G099700 [exp] 459 / 1e-153 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 450 / 4e-150 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 441 / 1e-146 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 438 / 1e-145 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 424 / 3e-140 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 413 / 6e-136 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10012280 pacid=23172665 polypeptide=Lus10012280 locus=Lus10012280.g ID=Lus10012280.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGATCAACTCAGTGATTGACCCGAAATCCGGGTTCTCCAAATCCAACTCGGTCTTCTACAGCAAACGTAACCCAATCCCTCTCCCACCAA ACCCTTCTCTCGACGTCACAACCTTCATCTCTTCCCAAGCTCACCACGGCAAGACCGCCTTCATCGACGCCGCCACCGGCCGCCGCCTCACTTTCGGGGA CCTCTGGTCCGCCGTCGACTCCCTCGCCACGCATCTCTCGGAAACCATGGGAATCCGAAAGGGACACGTGGTCCTCCTCCTATCCCCTAATTCCATCTCC TTCCCAATCGTCTGTCTCGCCGTCATGTCCCTCGGCGCAGTAATCACCACCACCAATCCTCTCAACACTCCTCGCGAAATCGCCAAACAGATCTCAGATT CCAAGGCTTCGTTGGCTTTCACCGTCCCCGAATTAGTTCCCAAACTCTCCGGTTCGAACCCTAAACTCCCGATCGTCCTAATCGATGGAGAGAATCACGA CTACGGCGTTCAATCTAGAGCCAAACAGCCCCTGATCGTTGCGAGATTGAGCGAGTTGTTGATTAAGAAGGCGGTTAATCGGAGTGGAGGAGGACGTGTC AGGGAGCAAGTTCACCAGGAAGACACGGCGACTCTGCTCTACTCCTCGGGGACTACAGGGGAAAGCAAAGGAGTCGTTTCCTCTCATCGGAATCTAATCG CGATGGTCCAGACGGTCGTCGGACGGTTCGATCCCGCCGACGGAGATCAGATCTTCGTCTGCACGGTCCCGATGTTTCACATCTACGGCCTCGCTGCGTT CGCCACTGGACTGTTGGCGTCCGGATCGACTATCGTCATCCTGCCTAAGTTCGAGATGCACGAGATGCTGTCGGCGATCGAGCGCTTCGGAGCGACTTAC CTGCCGTTGGTGCCGCCGATCCTGGTGGCGATGATCCACGGCAGCGATCAGATGCGGTCGAGATACAATTTGGGATCGCTGAGGTCTGTTTTGTCAGGCG GAGCGCCGCTCAGTAAAGAAGTGATCGAAGGGTTTTTGGAGAAGTATCCGACGGTTAGCATTCTTCAAGGGTACGGATTGACGGAATCGACGGGTATCGG TGCGTCCACGGATAGCGTGGAGGAGAGCCGGCGGTATGGGACGGCCGGATTGCTGTCGCCGAGCATGGAGGCGAAGATTGTCGAGCCGGAAAGCGGGAAA GCATTGCCGGTGAATATGACCGGTGAGCTTTGGCTCCGTGGTCCGTCCATTATGAAAGGTTACTTTAGCAATGCTGAGGCAACGTCATCGACTTTGGACT CGGAAGGGTGGTTAAGAACAGGGGACCTTTGCTACATAGACGAGGACGGCTTTATTTTCGTGGTAGATAGGTTGAAGGAGCTGATCAAGTACAAAGGATA TCAGGTTCCTCCTGCGGAGCTGGAAGCTTTGTTGCTTACTCATCCCGAAATCACAGATGCTGCCGTGATTCCGTTTCCTGACAAAGAGGTGGGACAATAC CCAATGGCGTATATTGTGAGGAAATCACCAGGAAGTAGTCGATTATCAGAAAGAGATGTGATGGGGTTTATTGCAGAGCAGGTTGCACCGTACAAACGTG TAAGGAGAGTTTCGTTCATTGATGCGGTGCCGAAGAACCCTTCTGGTAAAATTCTGAGGAAGGATCTTATCAAGTTTGCTACCTCAAAACTGGTTACGCT CTGTCTTCGCCGCCGATCTTCTCGATCCGACGGCCTTCGCTGCTACATGGGCCTTGTGTTAGCCGTCGTCGGCGTTACCGATCTCCCAGATAAGTCCAGC ATCAGTTCATCTCCTCTGCTATTCTCGAGTTTCCAACTTTCATCTCTGTTCCTGTCTTCCAGTTTCCTGGCATCATCTGTACGTTCTTGTGTTTGGTTTG CTCGTCACTTTCTATTCCTAGAAAACTCTTCAGTTTCGGCAAACCAGACCTTTCGCTGGTTACTGCATGTGGAAGGTTCGCTCTCTTGGGTCAGATGTAG GATCACTATCTTGCGATTCGGCAAACGAGGAAGGAATCGGTCGACTCCGCCGCTTCTCCTCCGTCTTTCTGCCGTGTCTCCCAACCCAAGCTATTATGTT GGCTCCTCTTCATCATATTTGCTGGTACCTCTCCCTGTGGGCCACCCACCAAGCATTCAAGGGCTTCCAACCCAGCATCCTCCCCGACAACATCTGCCAG AGTCAACACCTGGGAGTTCTCGATTTGTCCAGAAACTTTGCGTGATTACGCACTTCTCCGAGACCAGGTATGCGGCAAATAAGGAAATAGTATTTGTCGT AGCAAGAACAATCTGA
AA sequence Show only first row Show all	>Lus10012280 pacid=23172665 polypeptide=Lus10012280 locus=Lus10012280.g ID=Lus10012280.BGIv1.0 annot-version=v1.0 MAPPINSVIDPKSGFSKSNSVFYSKRNPIPLPPNPSLDVTTFISSQAHHGKTAFIDAATGRRLTFGDLWSAVDSLATHLSETMGIRKGHVVLLLSPNSIS FPIVCLAVMSLGAVITTTNPLNTPREIAKQISDSKASLAFTVPELVPKLSGSNPKLPIVLIDGENHDYGVQSRAKQPLIVARLSELLIKKAVNRSGGGRV REQVHQEDTATLLYSSGTTGESKGVVSSHRNLIAMVQTVVGRFDPADGDQIFVCTVPMFHIYGLAAFATGLLASGSTIVILPKFEMHEMLSAIERFGATY LPLVPPILVAMIHGSDQMRSRYNLGSLRSVLSGGAPLSKEVIEGFLEKYPTVSILQGYGLTESTGIGASTDSVEESRRYGTAGLLSPSMEAKIVEPESGK ALPVNMTGELWLRGPSIMKGYFSNAEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEITDAAVIPFPDKEVGQY PMAYIVRKSPGSSRLSERDVMGFIAEQVAPYKRVRRVSFIDAVPKNPSGKILRKDLIKFATSKLVTLCLRRRSSRSDGLRCYMGLVLAVVGVTDLPDKSS ISSSPLLFSSFQLSSLFLSSSFLASSVRSCVWFARHFLFLENSSVSANQTFRWLLHVEGSLSWVRCRITILRFGKRGRNRSTPPLLLRLSAVSPNPSYYV GSSSSYLLVPLPVGHPPSIQGLPTQHPPRQHLPESTPGSSRFVQKLCVITHFSETRYAANKEIVFVVARTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	4.9	0.8802
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	7.3	0.8652
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	8.7	0.9095
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	9.2	0.9046
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	11.1	0.8969
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	11.7	0.8896
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	14.0	0.8805
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	20.2	0.8424
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	20.9	0.8683
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	22.4	0.8837

Compare expression of checked genes

Lus10012280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.