Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62830 900 / 0 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 728 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT3G13682 654 / 0 LDL2 LSD1-like2 (.1) AT4G16310 263 / 1e-73 LDL3 LSD1-like 3 (.1) AT1G65840 180 / 1e-48 ATPAO4 polyamine oxidase 4 (.1) AT2G43020 158 / 3e-41 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 152 / 3e-39 ATPAO3 polyamine oxidase 3 (.1) AT4G29720 93 / 2e-19 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 87 / 1e-17 ATPAO1, APAO polyamine oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015996 [exp] 1447 / 0 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 709 / 0 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10037885 [exp] 643 / 0 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10038587 [exp] 632 / 0 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10028817 [exp] 510 / 4e-173 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10033928 [exp] 280 / 3e-79 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 276 / 3e-78 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 154 / 7e-40 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 149 / 7e-38 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013100 [exp] 1065 / 0 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.010G227200 [exp] 729 / 0 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.008G035200 [exp] 717 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 672 / 0 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.005G235400 [exp] 282 / 3e-80 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 279 / 3e-79 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.017G144001 [exp] 158 / 2e-41 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 158 / 2e-41 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 149 / 3e-38 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 143 / 5e-36 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10012283 pacid=23172713 polypeptide=Lus10012283 locus=Lus10012283.g ID=Lus10012283.BGIv1.0 annot-version=v1.0 ATGGAGACGGCAGCTGAACCTCCTACCGGACCACCGTCCACTACCGCCGGCGATCCACTCTCCGACCATTCTTCCCCTTCAACAGAAGCCACCCCATCCC CAGCCCGACCAGAAAACCGTTCCACTGATCAACAAAACTCCGAGCGGCTCAACAACACCCCTTCTCCTCTTCGACTCGACTCCCAAGACGAGTCTTCCGA CCTGGCCCAACTCGAACCAGTACCAGCGAATCCTACCGACCCGGCGCCTCCGCCGAGGAAAAGACGCCGCCGGAAGCGTTTTTTCACGGAACTCAACAAC GGAAACCCTTCGCTCCGCAACCGTTACAGGCTTCCAGGGGGTAGGTCGAAGGAATTGGACGTGGAGGCGCTGATAGCAATCTCGGTAGGGTTTCCAACCG ATTCCCTCACGGAGGAAGAGATCGAAGCCAATGTGGTTCGGAGAATCGGAGGAACCGAGCAGGCGAATTACATCGTGGTGAGGAACCACATCTTGGCACG CTGGAGGTCGAAAGTGACGGATTGGTTGACCAGGGAGCAAGCTCACGAGTCGATTCGGGCGGAACATGCTAATTTGGTGGATTCGGCGTACGATTTCCTG CTACAGCATGGATATATCAATTTCGGGGTGGCGAATTCGATTACAGAAAAAGCACAGCAAGAAGGGGGAAATGGCAATGTTGTAATTGTGGGTGCAGGGT TTGCTGGTCTGGTTGCTGCTAGGCAACTGAGGAGTATGGGATTCAAGGTTGTGATCTTGGAAGGCCGATCGAGACCCGGAGGCCGGGTTAAGACGATGAG ATTGAAAGGAGGTGATGGAGTTGAAGCTGCAGCTGATGCCGGTGGAAGTGTGTTGACTGGAATAAATGGAAATCCACTTGGGGTTCTAGCAAGGCAATTG GAATTGCCATTACATAAAGTGAGAGATATTTGTCCTCTGTATTTACCTGATGGGAAAGCTGTTGATCCTGAGATAGATACTAAAGTAGAGGCTTCATTCA ACAAGTTGCTTGATAGAGTATGCAAGCTTAGGCAGGCAATGATCGAGGACGTTAAATCCACTGATGTTAATCTAGGAACTGCTTTAGAATCATTTAGGCA CGCGTATAAAGTAGCCGAGGATCGTCAGGAGCGAATGCTGTTGAATTGGCATCTCGCTAATCTCGAGTACGCGAATGCTTCGTTGATGTCTGATCTCTCG ATGGCGTACTGGGATCAGGACGATCCATATGAGATGGGTGGGGATCACTGTTTCATCCCCGGTGGTAACGAAACTTTCGTTAAGGAACTTGCGAAAGACC TTCCTATTTTTTACTCTAGAGTTGTGGAGAGTATAAGGTACGGAGTTGACGGCGTTATTGTTTATGCTAACGGCCAAGAGTTCCGCGGCGACATGGTACT CTGCACGGTTCCCTTAGGCGTGCTTAAGAAAGGATCGATCGAGTTCGTCCCTGAGCTTCCACAAAGGAAGAAGGATGCCATCCAACGATTAGGTTACGGA TTGTTGAACAAAGTAGCATTGCTGTTTCCGTACGATTTCTGGGGTGGCGAGATCGACACCTTTGGGCATTTGACAGAAGACTCGAACATGAGAGGGGAGT TCTTTTTAATCTACAGCTATTCATCTGTCTCATTAGGTCCACTTTTGATAGCGCTAGTTGCAGGGGATGCTGCGGTACAATTCGAAACCATGTCTCCTGT AGAATCGGTCAAGAGGGTGCTACAGATCTTGAGAGGTATCTTCCACCCGAAGGGCATTGTTGTTCCTGATCCAGTCCAATCGGTATGTACAAGATGGGGA CAGGATCGTTTTACGTATGGGTCGTATTCTTACGTGGCTGTTGGCTCGTCTGGTGACGATTACGATCTTTTGGCCGAGAGTGTTGGAGATGGAAGGGTTT TCTTTGCAGGTGAAGCAACAAACAAGCAGTACCCTGCAACTATGCATGGAGCCTTCTTGAGTGGGATGAGGGAGGCTGCCAATATGCTGAGAGTGGCAAA GAAACGATCTTTGGGTTCGGGTACTACTAACAAGAGCGATGAAGGAGGTGGGGAGTTGGATAAGCTATACGAAATACCTGATCTGGAGCTTGGATGCTTC TCGATCCTATTCAATCCTCGATCGAACAACCCGGATTCGCAGTGTCTGTTGAGGGTGAAGATCAGAGGAGGAGGAGAATCGGAGGGTTGTTTCGTAAGTT TGTATGCGACGGTTTTGCGGAAGCAGGCCATTGAATTGTGTGCGTCGGATGGTGGGGATGATAAGAAGAGGTTGGAAACCTTGTGTCGCAAGTTTGAAGT GAGGCTAGTGGGGAGGAAAGGGTTGGGTGATGAAGGGGAGTCTCTTATTGCAGAGATCAATGCAGCAAGATCCAACATGGATGTAGGAAATTGA
AA sequence Show only first row Show all	>Lus10012283 pacid=23172713 polypeptide=Lus10012283 locus=Lus10012283.g ID=Lus10012283.BGIv1.0 annot-version=v1.0 METAAEPPTGPPSTTAGDPLSDHSSPSTEATPSPARPENRSTDQQNSERLNNTPSPLRLDSQDESSDLAQLEPVPANPTDPAPPPRKRRRRKRFFTELNN GNPSLRNRYRLPGGRSKELDVEALIAISVGFPTDSLTEEEIEANVVRRIGGTEQANYIVVRNHILARWRSKVTDWLTREQAHESIRAEHANLVDSAYDFL LQHGYINFGVANSITEKAQQEGGNGNVVIVGAGFAGLVAARQLRSMGFKVVILEGRSRPGGRVKTMRLKGGDGVEAAADAGGSVLTGINGNPLGVLARQL ELPLHKVRDICPLYLPDGKAVDPEIDTKVEASFNKLLDRVCKLRQAMIEDVKSTDVNLGTALESFRHAYKVAEDRQERMLLNWHLANLEYANASLMSDLS MAYWDQDDPYEMGGDHCFIPGGNETFVKELAKDLPIFYSRVVESIRYGVDGVIVYANGQEFRGDMVLCTVPLGVLKKGSIEFVPELPQRKKDAIQRLGYG LLNKVALLFPYDFWGGEIDTFGHLTEDSNMRGEFFLIYSYSSVSLGPLLIALVAGDAAVQFETMSPVESVKRVLQILRGIFHPKGIVVPDPVQSVCTRWG QDRFTYGSYSYVAVGSSGDDYDLLAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANMLRVAKKRSLGSGTTNKSDEGGGELDKLYEIPDLELGCF SILFNPRSNNPDSQCLLRVKIRGGGESEGCFVSLYATVLRKQAIELCASDGGDDKKRLETLCRKFEVRLVGRKGLGDEGESLIAEINAARSNMDVGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	0	1
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	2.2	0.8683
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	3.5	0.8422
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	7.7	0.8408
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	12.0	0.8149
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10002794 [exp]	12.6	0.8409
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	13.4	0.7846
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	17.4	0.7803
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	17.5	0.8257
AT5G62270			unknown protein		Lus10021682 [exp]	23.8	0.8075
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	26.2	0.8155

Compare expression of checked genes

Lus10012283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.