Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06530 747 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 679 / 0 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT2G35840 598 / 0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) AT1G51420 531 / 0 ATSPP1 sucrose-phosphatase 1 (.1) AT3G52340 503 / 7e-171 ATSPP2, SPP2 SUCROSE-PHOSPHATASE 2, sucrose-6F-phosphate phosphohydrolase 2 (.1.2.3) AT3G54270 462 / 4e-155 sucrose-6F-phosphate phosphohydrolase family protein (.1) AT4G27420 434 / 3e-141 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G31770 434 / 5e-141 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G13220 428 / 3e-138 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT1G71960 410 / 7e-132 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015994 [exp] 896 / 0 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10015995 [exp] 871 / 0 AT2G35840 602 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Lus10034775 [exp] 443 / 3e-144 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 439 / 6e-143 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 431 / 7e-141 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 432 / 3e-140 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10016649 [exp] 430 / 9e-139 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10022564 [exp] 429 / 1e-138 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10025596 [exp] 422 / 3e-136 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065900 [exp] 813 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 787 / 0 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199800 [exp] 668 / 0 AT2G35840 633 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.016G066100 [exp] 662 / 0 AT2G35840 624 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.008G013300 [exp] 540 / 0 AT2G35840 547 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.001G404000 [exp] 445 / 1e-145 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 444 / 2e-145 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 439 / 5e-143 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.004G236500 [exp] 436 / 2e-141 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G370600 [exp] 431 / 4e-139 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08472 [flax] [poplar] S6PP_C Sucrose-6-phosphate phosphohydrolase C-terminal CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10012284 pacid=23172683 polypeptide=Lus10012284 locus=Lus10012284.g ID=Lus10012284.BGIv1.0 annot-version=v1.0 ATGAAAGGAATGACTTCAACACAGGAGAAGGACATTCTGAATGGAATCACTGGCTGTGTAACTCCTGGAGAAGTTCTTGCTTTTATGGGTCCTTCAGGAA GTGGCAAAACAACACTTCTCAATCTTCTTGGCGGCCGGCTCAACCAGACTCATAACGTTGGTGGATCAATCACTTACAATGACCAGCCTTACTCCAAGTT CCTCAAAAGCAGGATAGGATTTGTGTCTCAGGATGATGTTCTGTTCCCTCACCTGACAGTGAGGGAAACACTCACATATGCAGCCTTGCTGAGACTGCCA AGTTCACTGACAAGAGAAGCCAAGGAAAAACGTGCAATTGATGTCATCCAAGAGCTTGGCTTGGAGAGATGCCAGGATACAATCATTGGTGGCTCATTTG TTAGAGGAGTTTCTGGTGGAGAGAGGAAAAGAGTCTGCATTGGCACTGAGATCATCATCAACCCTTCCCTACTCTTTCTCGACGAACCAACTTCTGGGTT GGACTCCACCACAGCTTTAAGGATTGTCCAGTTGCTGCAAGAAATTGCAGAGGCTGGGAAAACTGTGGTGACAACTATCCATCAGCCTTCGAGCAGGCTG TTCCACAAGTTCGACAAGCTGATCCTTCTCGGAAAAGGAAGCTTGCTCTATTTCGGAAAAGCATCCGAAGTCATGGCGTATTTCTCTTCGATCGGATGTA GCCCTCTTCTAGCAATGAACCCTGCTGAGTTCTTGCTGGACCTGGCCAATGGCAATGTCACCGATGTTTCGGTGCCTTCGGAACTGGAGGACAAAGTTCA AATGGGGACAACTACTGAGACAGAGACAAGACATGAGAAACCAACTCCTGCTCTCGTTCATGAGTATCTGGTGGAGGCGTACGAGACACGAGTTGCGAAG AGGGAAAAAAGGAAACTTTTGGCTCCAATCCCACTGGATGAAGAGATAAAGATGAAAGTTTCATCCCCTAAAAGGCAGTGGGGCGCAACTTGGTGGGAAC AGTACACTATTTTGTTCTGCAGAGGAATCAAAGAGCGCCGTCACGACTACTTCAGCTGGTTAAGAGTCACACAAGTTGTCTCAACAGCAACTATCTTGGG TTTGTTATGGTGGCAGTCTGATACCACCACTCCTAAAGGCCTTCAGGATCAGGCAGGGTTGCTGTTCTTCATTGCTGTATTCTGGGGATTCTTCCCAGTC TTCACCGCAATATTCACGTTCCCTCAAGAGCGGGCGGTGTTGAGCAAGGAGAGAGCAGCTGATATGTACAGACTGAGTGCATATTTCATGGCAAGAACCA CCAGTGATCTTCCACTTGATCTCATCTTGCCAGTACTGTTCCTTCTCGTAGTGTATTTCATGGCCGGATTGAAGATGGGTCCGGCCCCTTTCTTCCTAAC CATGGTCACAGTCTTCCTCTGCATTGTCGCAGCTCAGGCTGAAGGTGGTAGAACATTGACAATGGACCGCTTCAAGGAACCTGCTCGTCTTATGATAGTT TCAGATCTTGATCATACCATGGTTGATCACCATGATAAGGATAACATGTCTCTCCTTAGGTTCAATGCTTTGTGGGAAGCCCACTACAGATTTGATTCCC TGCTGGTTTTCTCCACCGGAAGGTCCCCTACGCTGTATAAAGAACTCAGGAAGGAGAAGCCCATGTTGACACCTGATATAACCATAATGTCTGTGGGAAC TGAGATCACTTATGGCAACTCTATGGTCCCTGACGATGGCTGGGTTGAAGTTCTGAATAAGAAATGGGACAGGAGTGTGGTTACTGAGGAGGCAACCAAG TTCTCTGAACTTACTCTTCAGTCAGAAACTGAGCAACGACCTCACAAGGTTAGCTTCTATGTGGATAAAGCCAAGGCTCAGGAGGTGATCAAGGCTCTCT CAGAGATATTCGAGAAACGCGGGTTGGATGTCAAGATAATTTACAGTGGAGGAATGGATCTGGATATTCTTCCGCAAGGAGCTGGAAAAGGCCAAGCTCT AGCTTACTTACATCACAAGTTTAAGAACGACGGGAAATTACCCAAGAACACTCTTGTCTGTGGTGACTCTGGAAATGATGCAGACCTTTTCACCATTCCT CATGTACATGGTGTTATGGTAAGCAATGCTCAAGAAGAACTTCTGCAATGGTACAATGAAAATGCTAAAAGCAATCCTAAAGTAATCCATGCAACAGAGA GGTGTGCAGCTGGTATTATACAAGCCATTGGTCATTTCGGCCTCGGTCCTAATACTCCTCCAAGAGATGTGACCAAATCTGCAGAATCTGATGCTGAAAA CACCCATCCCAACCATGAACTGGTCAAGTTCTTCTTGTCCTTGGAGAAATGGAGGCGTGCAGAAATTGAGAATTCAGATGCATATTTGTCAAGTTTCGCA ACTAACTCGAATCCGCCGGGCATTTTCGTCCATCCATCTGGTGCTGAGTTTTCCCTTTCCGATGTTGGTAACAAAATCAAGAGTTGCTACGGTGACAAGC AGGGGAAAGAGTTCAGATTCTGGGTGGATCAGGTTTTGTCTTCCCCAATTGGTTCAGATCAATGGCTAACAAAGTTCTACAAGTGGGAACAATCTGGGGA AGAACGCCGAGGTTGCGTGACCACTTGTATAATTTCGTTGAAGGCTGGGAATTCGACACCAACATTTCTGCATGTGCACCAGACATGGCTGGGAGACTCA GCAACTTGTACAGATGAATCGACCTGGGTCTTTTAG
AA sequence Show only first row Show all	>Lus10012284 pacid=23172683 polypeptide=Lus10012284 locus=Lus10012284.g ID=Lus10012284.BGIv1.0 annot-version=v1.0 MKGMTSTQEKDILNGITGCVTPGEVLAFMGPSGSGKTTLLNLLGGRLNQTHNVGGSITYNDQPYSKFLKSRIGFVSQDDVLFPHLTVRETLTYAALLRLP SSLTREAKEKRAIDVIQELGLERCQDTIIGGSFVRGVSGGERKRVCIGTEIIINPSLLFLDEPTSGLDSTTALRIVQLLQEIAEAGKTVVTTIHQPSSRL FHKFDKLILLGKGSLLYFGKASEVMAYFSSIGCSPLLAMNPAEFLLDLANGNVTDVSVPSELEDKVQMGTTTETETRHEKPTPALVHEYLVEAYETRVAK REKRKLLAPIPLDEEIKMKVSSPKRQWGATWWEQYTILFCRGIKERRHDYFSWLRVTQVVSTATILGLLWWQSDTTTPKGLQDQAGLLFFIAVFWGFFPV FTAIFTFPQERAVLSKERAADMYRLSAYFMARTTSDLPLDLILPVLFLLVVYFMAGLKMGPAPFFLTMVTVFLCIVAAQAEGGRTLTMDRFKEPARLMIV SDLDHTMVDHHDKDNMSLLRFNALWEAHYRFDSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNKKWDRSVVTEEATK FSELTLQSETEQRPHKVSFYVDKAKAQEVIKALSEIFEKRGLDVKIIYSGGMDLDILPQGAGKGQALAYLHHKFKNDGKLPKNTLVCGDSGNDADLFTIP HVHGVMVSNAQEELLQWYNENAKSNPKVIHATERCAAGIIQAIGHFGLGPNTPPRDVTKSAESDAENTHPNHELVKFFLSLEKWRRAEIENSDAYLSSFA TNSNPPGIFVHPSGAEFSLSDVGNKIKSCYGDKQGKEFRFWVDQVLSSPIGSDQWLTKFYKWEQSGEERRGCVTTCIISLKAGNSTPTFLHVHQTWLGDS ATCTDESTWVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	0	1
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	1.4	0.9159
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	1.4	0.9066
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	3.5	0.8932
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	3.6	0.8846
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	3.9	0.8923
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	3.9	0.9007
AT4G35320			unknown protein		Lus10026561 [exp]	7.3	0.8920
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	10.6	0.8886
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	11.0	0.8857
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	11.2	0.8844

Compare expression of checked genes

Lus10012284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.