Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54750 68 / 4e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015991 [exp] 159 / 8e-47 AT3G54750 488 / 4e-166 unknown protein Lus10016201 [exp] 122 / 2e-33 AT3G54750 492 / 2e-168 unknown protein Lus10029345 [exp] 122 / 2e-33 AT3G54750 482 / 2e-164 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G199200 [exp] 95 / 1e-23 AT3G54750 572 / 0.0 unknown protein Potri.016G065600 [exp] 94 / 2e-23 AT3G54750 557 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012287 pacid=23172688 polypeptide=Lus10012287 locus=Lus10012287.g ID=Lus10012287.BGIv1.0 annot-version=v1.0 ATGTCATTTTACTTGTTGGGTACAGTATCTTACATAATCCCCTGCTTCACCAGATCTTTCTTGACTATCTTATCCGGCATGGACGTCCCAGTGTTGTACT CAACTATCCCATTCAGTAGTGCTGCTCTTTCTGCTCCTGAGATAAGATGTGTAGATATGAAAAAAGCTGGCCATGGAGCTGCAGCTTCCCCTAGAGATGA CTCATGCGTCAATCTCAGCTCCATCATCGAAATTAAGGGAACATATCATCTACCACCATGGATCGTGAACCGCATTTGTGCTCTCATGAGCTGTGAAGTG ACAAGCTTCGAGGCAAGGTATAGTAATCATACTCGATTCATTTTGCCTAGTACGACTTGCTCGATTTTAGCATAA
AA sequence Show only first row Show all	>Lus10012287 pacid=23172688 polypeptide=Lus10012287 locus=Lus10012287.g ID=Lus10012287.BGIv1.0 annot-version=v1.0 MSFYLLGTVSYIIPCFTRSFLTILSGMDVPVLYSTIPFSSAALSAPEIRCVDMKKAGHGAAASPRDDSCVNLSSIIEIKGTYHLPPWIVNRICALMSCEV TSFEARYSNHTRFILPSTTCSILA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54750			unknown protein		Lus10012287 [exp]	0	1
					Lus10026808 [exp]	9.3	0.8890
					Lus10038209 [exp]	12.2	0.9178
					Lus10004923 [exp]	15.6	0.8615
					Lus10001854 [exp]	17.5	0.9140
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014874 [exp]	20.2	0.7974
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	20.3	0.9135
AT2G40070			unknown protein		Lus10008717 [exp]	24.8	0.9128
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	27.7	0.9128
AT1G47790			F-box and associated interacti...		Lus10042015 [exp]	30.4	0.9128
					Lus10042706 [exp]	32.8	0.9128

Compare expression of checked genes

Lus10012287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.