Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06560 435 / 4e-149 Protein of unknown function, DUF593 (.1) AT3G11850 345 / 3e-114 Protein of unknown function, DUF593 (.1.2) AT3G54740 290 / 8e-94 Protein of unknown function, DUF593 (.1.2) AT5G57830 86 / 5e-18 Protein of unknown function, DUF593 (.1) AT5G16720 78 / 4e-15 Protein of unknown function, DUF593 (.1) AT4G30830 73 / 9e-14 Protein of unknown function, DUF593 (.1) AT2G24140 68 / 2e-12 Protein of unknown function, DUF593 (.1) AT1G70750 69 / 5e-12 Protein of unknown function, DUF593 (.1) AT4G13630 60 / 2e-09 Protein of unknown function, DUF593 (.1.2) AT1G08800 59 / 4e-09 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015990 [exp] 870 / 0 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 534 / 0 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 526 / 0 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 99 / 3e-22 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 87 / 2e-18 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 85 / 1e-17 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 83 / 7e-17 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 75 / 4e-14 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 66 / 3e-11 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065200 [exp] 493 / 9e-172 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 476 / 6e-165 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 97 / 1e-21 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 96 / 5e-21 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 67 / 1e-11 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 62 / 4e-10 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.015G068400 [exp] 56 / 3e-08 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.017G055100 [exp] 56 / 5e-08 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 55 / 9e-08 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 54 / 2e-07 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10012288 pacid=23172695 polypeptide=Lus10012288 locus=Lus10012288.g ID=Lus10012288.BGIv1.0 annot-version=v1.0 ATGGATTCTGTACCATTTGCTCCACCTTCTATGGATGTTGGGAAATGCTGCGGCTGTGAGTGTAGAAGTTGTTCACCTTCCTGGATACGTACAGTGAAGA GGAAATACGATGAATCTGAAAGGCCCTTTGTTATACCGGGGATCGATATTTGCTCGAATCCGCGAGTCCAAATTGAGAATGAACTCGCTGCCCTGCGAGA GACTGTCAGTAGCCAACAGCAGGCGATCCAGGATTTGTATGCCGAATTGGAAGAGGAGAGGAATGCTGCTTCGTCAGCTGCAAATGAGGCCATGTCTATG ATACTGAGGCTGCAGAGGGAGAAGGCTGAGGTTCAAATGGAGGCTAGGCAGTTTAAGCGGTTTGCTGAGGAGAAGATGGCTCACGATCAGGAAGAGCTTG TGGCTTTGGATGATGTGGTGTATAAGCGAGAGCAGGCGATTCAGTCTCTTAGTTGTGAAGTTCAAGCTTACAAGCATAGGATGATGAGCTATGGGGTTAC TGAGGCTGAGGTGGAGGAGGGTGGATTTGACCTAGTGAACCATGGTTTGTCAGATTTTGATTTCCCGGAGTTTGATTACCCTCAGCTGAAATGCCATCCG AATGAGAACCGAGCTGCTGCTGATGATGAAGTTGTGGATGTTCGGAGTGAAACGCCTCAATATGGTGTAGTCCATCCTCGCCATGGTGAAACTCATTTGA AGAATCTCGAATACCGAATCCAACAGATGGAGAAATCGCCTAGCGGGAGTCGATTAGATGTTGATGATTCCAGTGGGAAGCATTTTCTGGAGAAGGTTGT AGTTCGTCAGTCTTCAAGGAAGGAAGATTACGTTACACACCCTGAAGAGCACAAGTTCTATGGAAATGATAAAAAAGCTGCCGAATTGGAGGATGAGATG GATGACAGAGTTTATACCATAGATGCTGTTCATAACGGTTCTACAGATCATAAGGTTTCCGGCGATGATGATTATGTTTCCACTCCAAGGACAGGAATTT TTGATCATCAGCCTGACTTGAGTGATCCTGATATCAAGAAACTATATACTCGGCTTCATGCTCTCGAGGCTGACAGGGAATCTATGAGGCAGGCGATTAT CTCTATGCGTACTGACAAAGCTCAACTGGTACTGCTTAAAGAAATTGCTCAACAGCTGTGCAAGGACATTACACCTGAACGTAGAATTCCCATGAAGAAG CCTTCTATTGTTGGAAGTTTCAACTTCATCTCAGTTTTCAAGTGGGTGACATCCTTTGTTTTCTGGAGGAAAAAAGCTCGCCAAACTCGGTACATGTTTG GAGCTACAACTGACAGTGATGGCTTGCTAATGCTATTGAACAAAGACGCCCGAGCCAGGCAACAGTGGAGATTTCTGTCCAGAACCCACCTTTGA
AA sequence Show only first row Show all	>Lus10012288 pacid=23172695 polypeptide=Lus10012288 locus=Lus10012288.g ID=Lus10012288.BGIv1.0 annot-version=v1.0 MDSVPFAPPSMDVGKCCGCECRSCSPSWIRTVKRKYDESERPFVIPGIDICSNPRVQIENELAALRETVSSQQQAIQDLYAELEEERNAASSAANEAMSM ILRLQREKAEVQMEARQFKRFAEEKMAHDQEELVALDDVVYKREQAIQSLSCEVQAYKHRMMSYGVTEAEVEEGGFDLVNHGLSDFDFPEFDYPQLKCHP NENRAAADDEVVDVRSETPQYGVVHPRHGETHLKNLEYRIQQMEKSPSGSRLDVDDSSGKHFLEKVVVRQSSRKEDYVTHPEEHKFYGNDKKAAELEDEM DDRVYTIDAVHNGSTDHKVSGDDDYVSTPRTGIFDHQPDLSDPDIKKLYTRLHALEADRESMRQAIISMRTDKAQLVLLKEIAQQLCKDITPERRIPMKK PSIVGSFNFISVFKWVTSFVFWRKKARQTRYMFGATTDSDGLLMLLNKDARARQQWRFLSRTHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	0	1
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	2.0	0.8790
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	2.4	0.8643
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	3.2	0.8690
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	3.5	0.8362
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	4.5	0.8475
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	4.9	0.8298
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	5.9	0.8307
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	6.2	0.8078
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	8.8	0.8187
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	11.2	0.8161

Compare expression of checked genes

Lus10012288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.