Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06580 798 / 0 FAD-linked oxidases family protein (.1) AT4G36400 135 / 1e-33 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G21482 49 / 5e-06 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G44390 47 / 3e-05 FAD-binding Berberine family protein (.1) AT5G44400 44 / 0.0004 FAD-binding Berberine family protein (.1) AT2G41510 43 / 0.0006 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015987 [exp] 980 / 0 AT5G06580 777 / 0.0 FAD-linked oxidases family protein (.1) Lus10028342 [exp] 150 / 1e-38 AT4G36400 788 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10041792 [exp] 123 / 2e-29 AT4G36400 682 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10024289 [exp] 50 / 6e-06 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10010105 [exp] 49 / 8e-06 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10016363 [exp] 46 / 5e-05 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10031046 [exp] 46 / 7e-05 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 45 / 0.0001 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10035433 [exp] 45 / 0.0001 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064800 [exp] 848 / 0 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1) Potri.007G018600 [exp] 151 / 2e-39 AT4G36400 817 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Potri.002G178300 [exp] 52 / 9e-07 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 50 / 5e-06 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.002G178400 [exp] 48 / 2e-05 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.001G462800 [exp] 45 / 0.0001 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.016G044100 [exp] 44 / 0.0003 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.011G158700 [exp] 44 / 0.0004 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.003G203600 [exp] 44 / 0.0004 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 43 / 0.0005 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF02913 [flax] [poplar] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012289 pacid=23172679 polypeptide=Lus10012289 locus=Lus10012289.g ID=Lus10012289.BGIv1.0 annot-version=v1.0 ATGCTTCTCTACCAGTGGCTCTCCCGCTTCCGCGCCACTTCGCGAAATGCCTTCTCAACTCTCCGCACTTCCCCTTCTCCCTTCTTCCGACCTCAGCCCA ATCCCCCAGCCGCCTTCCGCCACTCTCCACACTCAGGAGACGTTGGGAAACCATATTCCTTACTGTGGTCAACATGTTTGCTTCCGTTGACCGTTGGTCT GGTCTCAGCTGCTTCTATTTCTGCTCAGCCTCAGCCTTCCCTCTGCGATCGCGCCTCCAATCTTGACGACAGCCCTCGCATCGGAGGCAAGGATAGCACC GAGTTCGTGGTTAAAGGCTCGCACAAGCAGGTTCCCCAACAGCTCCTTGACGAGTTACGAGCTATCTGCAAGGATAATATGACATTGGACTTTGATGAAA GGTACTTCCATGGGAAGCCGCAGAATAGCTTTCACAAGGCCGTAAACATCCCCGACGTCGTTGTTTCCCCAAGGCAAGTCTTGTTACAATCGACCCGATA CTTCACAAGATTTAAAGAGTTACATTGGTCCGAGGAGGAAGTGTCTGAAATTGTCAAAGCTTGTAACAACCATAAGATACCAATTGTGCCATATGGTGGT GCTACATCGTTAGAGGGTCACACTTTGTCACCTCATGGTGGTGTTTGTCTTGACTTGTCATATATGAAGAAAGTTAAAGCCTTGCATGTTGAGGATATGG ATTGCGTTGTTGAGTCTGGGATTGGCTGGATGGAACTTAACGAGTACCTAGAGCCTTATGGTCTATTTTATCCACTTGATCCTGGTCCTGGTGCAACAAT TGGGGGGATGTGTGCAACACGATGCTCTGGCTCTCTGGCAGCAAGGTATGGGACTATGAGAGATAATGTCATCAACCTCAAGGTAGTTCTTGCAAATGGA GAAGTGGTGAAGACAGCTTCGCGTGCTCGCAAAAGTGCTGCAGGGTATGACTTGACCCGCTTGGTAATTGGAAGCGAAGGAACCCTTGGCATAGTAACAG AGGTCACTCTTCGACTTCAGAAAATTCCACAGCATTCAGTGGTGGCTATGTGCAACTTTCCTACAGTTAAGGATGCAGCAGATGTCGCCATTGCTACTAT GCACACTGGCATTCAGGTATCCAGGGTGGAGCTACTTGATGAGGTACAGGTAAAAGCTGTCAATATTGCTAATGGAAAAAGTTTACCTGAGCTCCCTACT CTGATGTTTGAATTCACAGGCACTGAGGCTTATGCACACGAGCAAACTCTGATCGTTCAGAAGATTGTTTCTGATTACAATGGTTCTGATTTTGTCTTTG CCAAAGACCCCGAGGTTAAAAAAGAACTCTGGAAGATTAGGAAGGAAGCTCTATGGGCTTGCTTTGCGATGGAACCCAAATTTGAAGCGATGATTACAGA CGTATGCGTTCCCTTATCAAAGCTTGGAGAATTGATCTCGAAATCCAAAGAGGAATTGGACTCATCGGAACTCATCTGCACGGTGATTGCCCATGCTGGT GACGGAAACTTCCACACCGTGATTCTTTTCGATCCTAATGTGGAAGAGCAAAGAAAGGAGGCAGAGAGATTGAACAATATCATGGTCCAATCTGCTTTGT CAATGGAAGGAACATGCACTGGTGAGCACGGAGTAGGGACAGGGAAAATGAAGTATCTGGAGAAGGAATTGGGGATTGAAAACTTGAGGACGATGAAGAA GATCAAAGACGCATTAGATCCCAACAACATCATGAACCCAGGAAAACTCATTCCACCCCATGTTTGCTTCTGA
AA sequence Show only first row Show all	>Lus10012289 pacid=23172679 polypeptide=Lus10012289 locus=Lus10012289.g ID=Lus10012289.BGIv1.0 annot-version=v1.0 MLLYQWLSRFRATSRNAFSTLRTSPSPFFRPQPNPPAAFRHSPHSGDVGKPYSLLWSTCLLPLTVGLVSAASISAQPQPSLCDRASNLDDSPRIGGKDST EFVVKGSHKQVPQQLLDELRAICKDNMTLDFDERYFHGKPQNSFHKAVNIPDVVVSPRQVLLQSTRYFTRFKELHWSEEEVSEIVKACNNHKIPIVPYGG ATSLEGHTLSPHGGVCLDLSYMKKVKALHVEDMDCVVESGIGWMELNEYLEPYGLFYPLDPGPGATIGGMCATRCSGSLAARYGTMRDNVINLKVVLANG EVVKTASRARKSAAGYDLTRLVIGSEGTLGIVTEVTLRLQKIPQHSVVAMCNFPTVKDAADVAIATMHTGIQVSRVELLDEVQVKAVNIANGKSLPELPT LMFEFTGTEAYAHEQTLIVQKIVSDYNGSDFVFAKDPEVKKELWKIRKEALWACFAMEPKFEAMITDVCVPLSKLGELISKSKEELDSSELICTVIAHAG DGNFHTVILFDPNVEEQRKEAERLNNIMVQSALSMEGTCTGEHGVGTGKMKYLEKELGIENLRTMKKIKDALDPNNIMNPGKLIPPHVCF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06580			FAD-linked oxidases family pro...		Lus10012289 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	9.5	0.8338
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	17.3	0.8187
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	20.0	0.7774
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	20.9	0.8112
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	21.7	0.8095
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	24.2	0.8085
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	25.5	0.7995
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	27.6	0.8017
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	27.7	0.8156
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	29.6	0.7744

Compare expression of checked genes

Lus10012289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.