Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38920 356 / 1e-122 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G02860 210 / 1e-65 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT3G27330 47 / 2e-05 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 45 / 5e-05 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G03510 42 / 0.0003 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G24800 42 / 0.0005 PRT1 proteolysis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015986 [exp] 603 / 0 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10030375 [exp] 187 / 1e-56 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10007867 [exp] 116 / 1e-31 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10032119 [exp] 47 / 2e-05 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 46 / 3e-05 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064600 [exp] 431 / 4e-152 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.006G198600 [exp] 430 / 7e-152 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.014G130300 [exp] 221 / 3e-70 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G205400 [exp] 219 / 1e-69 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G336832 [exp] 48 / 7e-06 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G178700 [exp] 46 / 3e-05 AT3G24800 269 / 9e-86 proteolysis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10012290 pacid=23172658 polypeptide=Lus10012290 locus=Lus10012290.g ID=Lus10012290.BGIv1.0 annot-version=v1.0 ATGAAATTCGGAGAGACGTTTCGAGAGTACCTTCGCGGAGACCAGGAGAAATTCCTGGACAAATGCTCGCACGTCGAGTACAAGCGGCTGAAGAAGGTGC TGAAGAGATGCCGGGTTTCTCACGGCTCTCAGGATCAACAAGGCGAGGAGGAACATGAAGATAATAGCCCCGGTTGCGGCCGATTCTGCAATTGTCAATC CTGTCCAGTGTGCGATCAGATGTTCTTTTCTGAATTGATGAAAGAAGCGTCTGATATAGCTGGATGCTTCAGCTCAAGAGCTAGGCGTCTTCTCCACCTC CACATGGCGAGAGGAATGCAAGGCTATGTGCTGAGGGTTCGTCAATGTTTTCGAGATGATAAGTTAGCTATGGCCGAAGAAGGCCGGATGTTGATGGAGT ATGTTACCATGAATGCTATTGCAATACGGAAAATCTTGAAGAAGTATGATAAGGTGCATAGCTCTGTCAATGGGAATATTTTCAAATCCAAGATGCGTGC GGAGCACATTGAGCTACTGCAATCTCCTTGGTTGATCGAGCTTGGAGCGTTGCTGTTGAACTTCAACGGCTTGAATGGAGGACGGTTTAGCGAGTTCTGT GGCCATTTCTCTTGCGATCTCGATGCTTCTGAGCCTGTAATGAAGCTCACTTTACCGAATTCGGTCACGATAGAATACAGCTTGACCTGTGCTATTTGCT TGGAAATGGTGTTTAATCCATATGCTTTGAGTTGCGGTCACCTTTTCTGCAAGTCATGCGCTTGCTCGGCTGCTTTCGTACCAATATTCCTCGGTCTTAA AGAAGCAACTCCAGATTCAAAGTGCTCAATCTGCAGAGAGGTTGGTGTGTACCAAAACGCAGTGCCGATGACGGAATTGGACTTGCTGTTGAAAAGAAGG TGCAGAGAGAATTGGAAAGAAAGGATGGCAGCTGAACGGGTGTTGATAGTTAAGCAAACGAAAGAGTACTGGGATATGCAGACCAAATATGCTATTGGGT ACTGA
AA sequence Show only first row Show all	>Lus10012290 pacid=23172658 polypeptide=Lus10012290 locus=Lus10012290.g ID=Lus10012290.BGIv1.0 annot-version=v1.0 MKFGETFREYLRGDQEKFLDKCSHVEYKRLKKVLKRCRVSHGSQDQQGEEEHEDNSPGCGRFCNCQSCPVCDQMFFSELMKEASDIAGCFSSRARRLLHL HMARGMQGYVLRVRQCFRDDKLAMAEEGRMLMEYVTMNAIAIRKILKKYDKVHSSVNGNIFKSKMRAEHIELLQSPWLIELGALLLNFNGLNGGRFSEFC GHFSCDLDASEPVMKLTLPNSVTIEYSLTCAICLEMVFNPYALSCGHLFCKSCACSAAFVPIFLGLKEATPDSKCSICREVGVYQNAVPMTELDLLLKRR CRENWKERMAAERVLIVKQTKEYWDMQTKYAIGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	0	1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	2.8	0.8804
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	6.5	0.9110
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	14.4	0.8930
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	16.4	0.8940
AT1G44790			ChaC-like family protein (.1)		Lus10003737 [exp]	16.6	0.8904
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	28.7	0.8836
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	29.6	0.8819
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	31.7	0.8482
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	37.7	0.8402
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	39.0	0.8692

Compare expression of checked genes

Lus10012290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.