Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56880 103 / 3e-27 VQ motif-containing protein (.1) AT2G41010 86 / 3e-20 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015982 [exp] 270 / 3e-92 AT3G56880 135 / 5e-39 VQ motif-containing protein (.1) Lus10016205 [exp] 124 / 6e-35 AT2G41010 99 / 5e-25 calmodulin (CAM)-binding protein of 25 kDa (.1) Lus10029339 [exp] 115 / 6e-31 AT2G41010 101 / 4e-25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029600 [exp] 101 / 3e-26 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G032300 [exp] 82 / 5e-19 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10012292 pacid=23172652 polypeptide=Lus10012292 locus=Lus10012292.g ID=Lus10012292.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCTGAGAATCTCGCACTGTTCGACTCCTGGACATTCCGCCCATCCTTCCCTGACTCATGGATCTCCGAATCTTACTCTCGCGACACCG ACGCCCTCACCAAAGCCCTCCAGCAATCCCTCCCCGCCCAACCCACCCCCGCTCCCGCCGCCCCGAAACCCAAACCCGGCCGCAACAACCGCACCGGTCC CGGCGGCGCTACAGGCAAGGTATCGAAGAGAAAGCCACGCGCGTCGTCCAAGAAGTCGCAGACCACCTTCATCACAGCGGATCCGGCTAATTTCCGGCAG ATGGTGCAGCAGGTCACTGGTGGAGTACGGTTCACCGACAACTTGGTCCCTGTCCTAAAGCCGGAGCCTCACAGGATCGGTGCCGCGAGCAGGTTGATTC ACCACCATCATCTCGAGCAGGCCACTACTGTAGTAGGAGGAGGAGGAGGAGGAGGACTGCCGACACTGGATACGTCGTCGTTTCTGCTCGACCATCAGGT AGGGGATAAAACAACGGAGGCGTTTAATAACGGTGGCCCCGTCGCTTATTCGCAGCAGCCGATGGATTTTGACGGATTCTCGAGCTTCCCGACTCTGGAG TCGTGGAAAGTCATTTAG
AA sequence Show only first row Show all	>Lus10012292 pacid=23172652 polypeptide=Lus10012292 locus=Lus10012292.g ID=Lus10012292.BGIv1.0 annot-version=v1.0 MASSSENLALFDSWTFRPSFPDSWISESYSRDTDALTKALQQSLPAQPTPAPAAPKPKPGRNNRTGPGGATGKVSKRKPRASSKKSQTTFITADPANFRQ MVQQVTGGVRFTDNLVPVLKPEPHRIGAASRLIHHHHLEQATTVVGGGGGGGLPTLDTSSFLLDHQVGDKTTEAFNNGGPVAYSQQPMDFDGFSSFPTLE SWKVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	3.0	0.8928
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	4.5	0.8613
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	6.0	0.8594
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	6.3	0.8741
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	6.5	0.8719
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	6.6	0.8644
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	8.4	0.8579
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	9.9	0.8404
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	11.6	0.8519
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	14.1	0.8490

Compare expression of checked genes

Lus10012292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.