Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 886 / 0 DNAse I-like superfamily protein (.1) AT3G58580 872 / 0 DNAse I-like superfamily protein (.1) AT3G18500 130 / 3e-32 DNAse I-like superfamily protein (.1.2.3) AT1G31500 113 / 3e-27 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 113 / 5e-26 DNAse I-like superfamily protein (.1) AT1G73875 102 / 5e-23 DNAse I-like superfamily protein (.1) AT1G31530 51 / 9e-07 DNAse I-like superfamily protein (.1) AT1G02270 50 / 3e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 49 / 6e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016206 [exp] 980 / 0 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 977 / 0 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 949 / 0 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 118 / 3e-28 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 112 / 2e-26 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10026203 [exp] 107 / 6e-25 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10013119 [exp] 108 / 2e-24 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 105 / 2e-23 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 99 / 1e-21 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 974 / 0 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 973 / 0 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 109 / 1e-24 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 106 / 2e-24 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 99 / 4e-22 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.014G108200 [exp] 57 / 3e-08 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 56 / 4e-08 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 55 / 1e-07 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 54 / 3e-07 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G067300 [exp] 42 / 0.0008 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10012293 pacid=23172716 polypeptide=Lus10012293 locus=Lus10012293.g ID=Lus10012293.BGIv1.0 annot-version=v1.0 ATGCTGAGTGTGCTGCGTGTGCACCTCCCGTCGGATATCCCCATTGTAGGCTGCGAGCTAACGCCATATGTGCTCTTACGGCGACCTGACAAGGCTCTTT TCTCCGAAGATGTCCCCGAGTCCTCCCCTCTCGATGGTCGTTTCTTGAGATACAAGTGGTACCGGATACAAAGTGATAAGCAAGTATCTGTATGTAGTAT ACATCCATCAGAGCAAGCCACATTGCAGTGTGTAGGCTGCGTCAAGGCGAAAATACCAGTCACGAAAAGTTACCATTGCTCTCCCAAGTGTTTCTCTGAT GCCTGGCAGCATCATCGAGTTCTACATGATCGAGCGGCAAGTGCTGCGATTGAGAATGGGAATGAAGAAGAAGAGTTGTTTGGACGTCTCAATAGCACAG GATCAGGTGTTCTTAATGCTATTTTATCCAGTTCTGCTTCAACTGCTAGTTTGACGAATGGATCAACACCTCTGTATCCTGCGACGATGACACAGAGAAG TGGTGGTGAGACTTGGTTTGAAGTGGGGCGGTCAAAAATGTATACACCGTCAGCTGATGATATTGGACACGTTCTTAAGTTTGAGTGTGTTGTGGTGGAT GCTGAAACTAAACAGACTGTGGGACATCCCAGCACTCTTTTGACTTCCCGTGTTATTCCGGCTCCGTCCCCTCCACCACGTCGGTTGTTTCCTGTAAGTG GAGTGGATGGGATTAGACATGTAGATGCTGATGGTCGCATTTCATCTACTGGAACTTTCACTGTTCTCTCATATAACATTTTGGCTGACACCTATGCTAC AAATGAGACGTATACTTACTGCCCCTCATGGGCCCTTTCATGGGCATATCGCCGACAAAATTTGCTGCGGGAGATAGTTGAATATCGAGCAGACATTGTT TGTCTCCAGGAGGTTCAAAACGATCATTTTGAGGAATTCTTTGCACCGGAGTTGGACAAGCATGGTTATCAAGGCCTGTACAAGCGGAAGACGAATGAGG TTTACAGTGGAAATCCTAATACCATAGATGGTTGTGCAACTTTCTTTCGTAGAGATAGATTTTCGCATGTAAAAAAATATGAGGTTGAATTCAATAAGGC TGCTCAGTCTTTGACTGAAGCCTTGGTTCCTAGTGCTCAGAGAAAAACTGCTTTGAACCGATTAGTTAAGGATAATGTCGCATTAATTGTGGTTTTGGAG GCGAAGTTCAGCAACCAAGGAACTGATAACCCTGGGAAGCGGCAGCTTCTGTGTGTTGCAAACACTCATGTAAATGTCCACCATGATCTTAAGGATGTTA AACTATGGCAGGTTCTTACTCTTCTTAAGGGATTAGAGAAAATAGCTGCAAGTGCAGATATTCCTATGCTAGTTTGCGGAGATTTCAATTCACTGCCTGG AAGTGCTCCTCATGCCCTTCTCGCCATGGGGAAGGTGGATCCATTACATCCTGATTTAGTTATGGACCCTCTTGGTATCTTACGTCCTCACAGCAAACTG ACGCATCAGCTACCACTGGTTAGTGCTTACTCATCTTTTGCAAGACTGGGAATGGGTCTTGGCCTGGAGCAACAAAGGAGGAAGCTAGACCCTGCAACCA ATGAGCCATTGTTTACTAATTGCACTAGAGACTTTATCGGCACTCTTGATTACATATTTTACACAGGTGGAGCCCCTGTTTATATCTTTCCATCGGAGGA TGCTATAATTTACTCTGACTCTTTGACGGTGGAGTCCTTGTTGGAACTCCTGGATGAGGAAAGTTTGAGAAAAGATACAGCGCTTCCTTCTCCCGAGTGG TCCTCGAATCATACTGCGCTGCTAGCTGAATTTCGTTGCAAACCTAGACTAAGACGTTGA
AA sequence Show only first row Show all	>Lus10012293 pacid=23172716 polypeptide=Lus10012293 locus=Lus10012293.g ID=Lus10012293.BGIv1.0 annot-version=v1.0 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKALFSEDVPESSPLDGRFLRYKWYRIQSDKQVSVCSIHPSEQATLQCVGCVKAKIPVTKSYHCSPKCFSD AWQHHRVLHDRAASAAIENGNEEEELFGRLNSTGSGVLNAILSSSASTASLTNGSTPLYPATMTQRSGGETWFEVGRSKMYTPSADDIGHVLKFECVVVD AETKQTVGHPSTLLTSRVIPAPSPPPRRLFPVSGVDGIRHVDADGRISSTGTFTVLSYNILADTYATNETYTYCPSWALSWAYRRQNLLREIVEYRADIV CLQEVQNDHFEEFFAPELDKHGYQGLYKRKTNEVYSGNPNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEALVPSAQRKTALNRLVKDNVALIVVLE AKFSNQGTDNPGKRQLLCVANTHVNVHHDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSLPGSAPHALLAMGKVDPLHPDLVMDPLGILRPHSKL THQLPLVSAYSSFARLGMGLGLEQQRRKLDPATNEPLFTNCTRDFIGTLDYIFYTGGAPVYIFPSEDAIIYSDSLTVESLLELLDEESLRKDTALPSPEW SSNHTALLAEFRCKPRLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	0	1
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	4.0	0.8757
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	4.1	0.8953
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	4.5	0.8723
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	6.0	0.8931
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	6.3	0.8431
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	6.5	0.8526
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10043225 [exp]	7.1	0.8398
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Lus10018371 [exp]	8.2	0.8253
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	8.9	0.8604
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	9.8	0.8709

Compare expression of checked genes

Lus10012293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.