Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58530 474 / 5e-169 RNI-like superfamily protein (.1) AT5G23340 108 / 2e-26 RNI-like superfamily protein (.1) AT4G15475 96 / 2e-21 F-box/RNI-like superfamily protein (.1) AT1G21410 87 / 5e-19 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 85 / 4e-18 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G27920 82 / 6e-17 F-box family protein (.1) AT2G25490 82 / 1e-16 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G01720 77 / 3e-15 RNI-like superfamily protein (.1) AT1G55590 73 / 7e-14 RNI-like superfamily protein (.1) AT5G25350 72 / 2e-13 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015980 [exp] 627 / 0 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10040998 [exp] 109 / 1e-26 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 106 / 1e-25 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 99 / 3e-22 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 92 / 3e-20 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 90 / 2e-19 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10028645 [exp] 88 / 2e-19 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012214 [exp] 89 / 6e-19 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 88 / 7e-19 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195800 [exp] 529 / 0 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 103 / 1e-24 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 99 / 2e-22 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G185700 [exp] 89 / 2e-19 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 85 / 4e-18 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 82 / 7e-17 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 82 / 9e-17 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 82 / 1e-16 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 81 / 2e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 78 / 1e-15 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012294 pacid=23172642 polypeptide=Lus10012294 locus=Lus10012294.g ID=Lus10012294.BGIv1.0 annot-version=v1.0 ATGGGAGAGAAGGCGGCGGAGGGGGAGGTGACGTGGAGCAGGGAGATGGTTCCAAGAGTAATGAAGATTGTCGGTGCAAAGCTTTCTCAGAGAGATTTGG TTTCGGTTCTCCTCGTCAGTCCTTGGATCCACCGCGCTCTCGTCTCTTACTCTTCTCTCTGGCTTGTACTTGATTTTAGGGAAACTGCACGCGCTGGTGA GCGGCTCGTAGCTGCTCTTGCTCTGCCAAGGTATCGTCATTTGAAGCAGATAAATCTGGAGTTTGCTCAAGATGTTGAAGACAGGCATCTGGAAACGATT CGAGAGGAGTTTCATCGCAATCTCAAAAACTTGGAGGCGTTGAACCTCAATGTATGCCAAAAGGTTTCTGATAAGGGAATTGAAGCCGTCACTAGCTGTT GCCCTGAACTAAAGATCTTCTCTGTTTATTGGAACGTTAGGGTGACTGATTTTGGTATCGAGCATTTGGTGGAGAACTGCAAAAACATACGTGATCTGAA CTTAAGCGGATGCAAGAATTTATCAGATAAAAGCATGCGGTTAATTGCTGACAATTATCCAGAATTACTGTCATTAAATCTCACAAGGTGCGTCAAACTG ACAGACGATGGCTTGCGACAGATATTACAGAAGTGTTCATTATTGCAGAGCTTAAATCTTTATGCACTTTCCAGCTTCACAGACAGAGCATTCAAGAGCA TATCTAATCTAGCCAATCTGAGATTTCTGGATTTATGTGGTGCGCAGCATCTATCAGATGAAGGTCTTTCTTGTATAGCAAAGTGCAAAAACATGGTCTC CCTCAATTTGACATGGTGTATACGTGTCACCGACATCGGAGTCATTGCTGTTGCTGAAGGTTGCACCTCTCTGGAGTTCCTCAGTCTGTTCGGAATAGTT GGTGTAACTGATAAGTGTATGGAGGCTCTTTCAAGGTGCTGTTCAAATACACTTAAAACACTTGACGTGAATGGCTGCGTTGGCATAAAGGTGAGGAGGA GCCGCGATGAATTGCTGCAGTTGTTCCCCTACCTCGAGTGTTTCAAAGTTCACAGTTGA
AA sequence Show only first row Show all	>Lus10012294 pacid=23172642 polypeptide=Lus10012294 locus=Lus10012294.g ID=Lus10012294.BGIv1.0 annot-version=v1.0 MGEKAAEGEVTWSREMVPRVMKIVGAKLSQRDLVSVLLVSPWIHRALVSYSSLWLVLDFRETARAGERLVAALALPRYRHLKQINLEFAQDVEDRHLETI REEFHRNLKNLEALNLNVCQKVSDKGIEAVTSCCPELKIFSVYWNVRVTDFGIEHLVENCKNIRDLNLSGCKNLSDKSMRLIADNYPELLSLNLTRCVKL TDDGLRQILQKCSLLQSLNLYALSSFTDRAFKSISNLANLRFLDLCGAQHLSDEGLSCIAKCKNMVSLNLTWCIRVTDIGVIAVAEGCTSLEFLSLFGIV GVTDKCMEALSRCCSNTLKTLDVNGCVGIKVRRSRDELLQLFPYLECFKVHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	2.0	0.9636
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	6.1	0.9197
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10042960 [exp]	6.6	0.9177
AT2G26520			unknown protein		Lus10021765 [exp]	7.9	0.9385
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	8.4	0.9486
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	10.7	0.9475
AT1G71760			unknown protein		Lus10030260 [exp]	10.8	0.9358
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	11.0	0.9344
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	11.5	0.9470
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	11.7	0.9426

Compare expression of checked genes

Lus10012294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.