Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11120 530 / 0 translation elongation factor Ts (EF-Ts), putative (.1) AT4G29060 89 / 1e-18 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016073 [exp] 725 / 0 AT4G11120 549 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10043229 [exp] 91 / 3e-19 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 84 / 3e-17 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172300 [exp] 568 / 0 AT4G11120 514 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Potri.018G083900 [exp] 88 / 2e-18 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00889 [flax] [poplar] EF_TS Elongation factor TS
Representative CDS sequence Show only first row Show all	>Lus10012296 pacid=23176748 polypeptide=Lus10012296 locus=Lus10012296.g ID=Lus10012296.BGIv1.0 annot-version=v1.0 ATGGCTTTCTGCAGAAGCGCAAAGCGTCCGCTTCACATGATGATGACGTCTACTGCTAGGATCGCCACCTCCAAGGGGAGCTGCTCTTCCACTCTAGAAT CCAGTCTCGGACTTTTCCTACGGAGGTTCAACGGTCAGGCTCCTGCGGCGGCGGATCAAAAAAATCTCATCAAGCAATTGAGGGAGAGAACCAGTGCTCC AATCAAGGACGTCAAGGCTTCCCTCGTCGAATGTAACTGGGACATTGAGGCGGCACAAAAGGATTTGAGGAAAAGAGGGATAGTTCTGGCGTCGAAGAAG GCGGCTCGAACTGCTACTGAAGGGTTGCTTGCATTGGCACACAACGAGGGAAAAGCTGCTATTATCGAGCTTAATTGCGAGACCGACTTTGTTGCCAGAA ACGAGATATTTCAGTACTTGGCTCTAACTCTAGCCAAGCAAGCTCTGCTGGTCGAGAATGGTTCTCAGCAGGCATCAGCTGTCCTTCCTTTTGGACCTGA ATCATTGGAGGAACTGAAGTTAAATCTTGAACATCCCAAGATAAGTGGAGAAACTACTGTACAAAACGCAATTACTGAGGTAGCTGCAATGATGGGTGAG AACGTGAAACTCAGAAGAGGGTTTGTGATGTCTACTCCGGGTGTTCTTTCAACCTACCTCCATACAAGTCCTCAACCAGGTTTGGGCCGTATTGCTGGAC TTTTGTCACTTGAAGCTGAGGATGCAACTAGTTCTCACTTGGATGCTCTTCAGCGAGTAGGATCAGAATTGGCAATGCATGTGGTTGCTGCAAAGCCATT ATTCTTAAATAAGGAACTAGTTTCTTCTGAGGCATTGGAGAGTGAGCGCGAGATTCTTAAGTCTCAGGCCGAAAGTACTGGGAAATCACAGATGGCCATC GAGAAAATGGTTGAAGGTCGTATGCGAAAATATTTTGAGGAAGTTGTTCTCATGGAGCAGAAATTTATTGTGAATGATACTCTAAATGTCAAGACTCTGT TGAACAATCTGTCCAAGGAAGTGGGTTCACCAGTGAAGATAGGCAACTTTTTCAGAATGGAAGTTGGCGAAGGAATTCAAAGAGGTCTTTTAGTCTTGAA TGGTGACTCAATTGTGAACTACACACCTTGTAACTCTACGTGCTACAATTCTTTCCTATACAGGCTCGATGCATCTGCAGATGAACCAGTGGCTCAAGCC GCATAA
AA sequence Show only first row Show all	>Lus10012296 pacid=23176748 polypeptide=Lus10012296 locus=Lus10012296.g ID=Lus10012296.BGIv1.0 annot-version=v1.0 MAFCRSAKRPLHMMMTSTARIATSKGSCSSTLESSLGLFLRRFNGQAPAAADQKNLIKQLRERTSAPIKDVKASLVECNWDIEAAQKDLRKRGIVLASKK AARTATEGLLALAHNEGKAAIIELNCETDFVARNEIFQYLALTLAKQALLVENGSQQASAVLPFGPESLEELKLNLEHPKISGETTVQNAITEVAAMMGE NVKLRRGFVMSTPGVLSTYLHTSPQPGLGRIAGLLSLEAEDATSSHLDALQRVGSELAMHVVAAKPLFLNKELVSSEALESEREILKSQAESTGKSQMAI EKMVEGRMRKYFEEVVLMEQKFIVNDTLNVKTLLNNLSKEVGSPVKIGNFFRMEVGEGIQRGLLVLNGDSIVNYTPCNSTCYNSFLYRLDASADEPVAQA A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	0	1
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	4.9	0.8758
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	6.4	0.8799
					Lus10032698 [exp]	8.5	0.8424
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	9.6	0.8699
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	11.0	0.8568
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	11.5	0.8589
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	13.7	0.8233
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	15.4	0.8430
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	15.6	0.8345
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	18.3	0.8266

Compare expression of checked genes

Lus10012296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.