Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48330 523 / 0 RUG2 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT2G04039 124 / 4e-33 unknown protein AT5G63860 127 / 2e-31 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 107 / 6e-25 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G60870 106 / 2e-24 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G16040 105 / 2e-24 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 102 / 2e-22 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 96 / 2e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G08710 94 / 2e-20 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT1G27060 92 / 5e-20 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016075 [exp] 819 / 0 AT5G48330 447 / 1e-152 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 129 / 4e-32 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 108 / 4e-25 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 103 / 1e-23 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 100 / 2e-22 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10042215 [exp] 94 / 3e-20 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10036030 [exp] 94 / 2e-19 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10030999 [exp] 93 / 2e-19 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 92 / 3e-19 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G198300 [exp] 593 / 0 AT5G48330 533 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.014G172800 [exp] 139 / 6e-38 AT2G04039 169 / 3e-53 unknown protein Potri.002G217400 [exp] 135 / 5e-37 AT2G04039 171 / 2e-54 unknown protein Potri.007G100200 [exp] 134 / 1e-33 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 110 / 7e-25 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G101800 [exp] 105 / 2e-24 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 105 / 2e-24 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 100 / 3e-22 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.016G101700 [exp] 100 / 4e-22 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.015G107000 [exp] 95 / 1e-20 AT1G27060 446 / 1e-156 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0186 [flax] [poplar] PF11210 [flax] [poplar] DUF2996 Protein of unknown function (DUF2996)
Representative CDS sequence Show only first row Show all	>Lus10012298 pacid=23176828 polypeptide=Lus10012298 locus=Lus10012298.g ID=Lus10012298.BGIv1.0 annot-version=v1.0 ATGCTACGGCGCATCTGCACCATCCTGAAGAAGGATCACAGCCTTCTCCAGCCGACAGCTCGCTTCTCTTCCACTACCAACAATGGCGCCGCTGATAGTT CACGCTGCGGGGTAGTGATGAGCTTCGGTGACGGCAATCATGGAGCTCTGGGTCTACCGCCTTCTCTTACAGGTATAGGAGCCGATGTGTACGAGCCGAC TCTCATTCCAGGGCTTCCATCCGATATCACATCCGTCACCGCCGGCCACTATCATTCTCTCGCCGTCACCTCTCGAGGAGATCTATGGGCATGGGGCCGC AACGAGGAAGCTCAACTTGGCCGAGGCGTTCTTGTCCCCAGAGACACTTGGCATGAGCCAAAAAGAGTGCAAAGCTTGGATCAAGTTCACGTTACAGCTG CATTTGCCTCGGGTGTCATATCTTCAGCCATTGGAGATGATGGTTCTTTGTGGGTGTGGGGGAAGTCCAAGAGGGGGCAACTTGGTCTAGGTCCGGGGAT CACAGATGCAGCAGTCCCCTCCAGAGTTCCTAAACTTGCAGGAGAAAATATAGCTAAGGTCTCATTTGGATGGGGTCATGCTCTTGCACAAACTGAGGAT GGAAAACTATATGGCTGGGGCTATTCAGCCGATGGTAGGATAGGAAAGATCGGTGGGTTTGTGGAGGCGTCTGTGCTGGATTCAGCGGGAGCAGCTAACT CTAAAGGTGGCGACCAATTCGAAGAAGCAGAAAGGCGAGTCTTGGAAGGAATGGCAAAGGAAAAGGACATGCCCATAGCATGGGAGCCATGTCTAGTCGA AGAACTGAACGGAACTCGAGTCGTAGACATTGCTTGCGGGCTTGATCATTCCTTGGTCCTTTGCAGCGATGGCAAGCTGTTAACCTCAGGAAGCAACATA TACGGTCAGTTGGGCAGAGAAAATCAAGGCATGGGATTCTTTCCAGCTGACGTTGCCCTCCACACTTTGCATATAGCATCAGGCCTCGGCCATTCTTTAG CAATTTGCAATGCTGCCGGAAGAAGTCCTATCTTGTCGTGGGGATGGAACGGAAGTTCGCAGCTTGGAAGGATGGGAAACGAGAACAGACCATCAGAGGT GGAGGGAATGTCGGAGGAGAGAGCTATATCAGTTTCGGCAGGGCGAGTTCATTCTTTGGCCGTGACATGTGAAGGTCAGCTGTGGGTTTGGGGATGCGGT AAGAATGGCAGACTTGGGTTGGGGAGCCCTTATGATGAACAGGAGCCGGTAATGGTGGATAGTTTGGAAGGTTGTAAAGTGATGCAAGCTGTTGCAGGGT TTGATCATAATCTTGTTTTGCAGATGGTTAGCAAGATTGTGACACTGAGAACAACCACCACCTGCTGTTCTGCTGTACAAGAATCATCATCGTCCACTGC AACTTCCACAGAAGAAGAAAAGCCAAAACCGAAGCCAAAACCAGCAGCTAAGGCTCCAGTCAAGCCATTGCCTCAGTTGATGGAAGAGGAAGTTATCCCT TTACTGACATCGACTCTCGAAGTCCAAGATGACATCTCTGAGCTTCAGCTATCCTTCCAAGACAACATATTGGAAGGTTCGCGAGGGTTTTCTCTATCCT CCTATGGCCAAGGATCCAGTACTGTTGAGCCATTTCTCATTGATGAGAAGAAGATTACAGCTAAACATGTTGTGTTTTGGGTGGAGAAGCGTTTGGCAGC TCAAGGAATCATTCCTGTCTGGACAGAATAG
AA sequence Show only first row Show all	>Lus10012298 pacid=23176828 polypeptide=Lus10012298 locus=Lus10012298.g ID=Lus10012298.BGIv1.0 annot-version=v1.0 MLRRICTILKKDHSLLQPTARFSSTTNNGAADSSRCGVVMSFGDGNHGALGLPPSLTGIGADVYEPTLIPGLPSDITSVTAGHYHSLAVTSRGDLWAWGR NEEAQLGRGVLVPRDTWHEPKRVQSLDQVHVTAAFASGVISSAIGDDGSLWVWGKSKRGQLGLGPGITDAAVPSRVPKLAGENIAKVSFGWGHALAQTED GKLYGWGYSADGRIGKIGGFVEASVLDSAGAANSKGGDQFEEAERRVLEGMAKEKDMPIAWEPCLVEELNGTRVVDIACGLDHSLVLCSDGKLLTSGSNI YGQLGRENQGMGFFPADVALHTLHIASGLGHSLAICNAAGRSPILSWGWNGSSQLGRMGNENRPSEVEGMSEERAISVSAGRVHSLAVTCEGQLWVWGCG KNGRLGLGSPYDEQEPVMVDSLEGCKVMQAVAGFDHNLVLQMVSKIVTLRTTTTCCSAVQESSSSTATSTEEEKPKPKPKPAAKAPVKPLPQLMEEEVIP LLTSTLEVQDDISELQLSFQDNILEGSRGFSLSSYGQGSSTVEPFLIDEKKITAKHVVFWVEKRLAAQGIIPVWTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	0	1
AT1G44000			unknown protein		Lus10029738 [exp]	1.7	0.9089
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	3.5	0.9030
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	4.5	0.8769
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	6.0	0.8791
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	6.5	0.8678
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	9.9	0.9042
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	12.2	0.8873
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	12.2	0.8867
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	12.4	0.9040
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	12.5	0.8719

Compare expression of checked genes

Lus10012298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.