Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07580 96 / 1e-25 unknown protein AT5G48335 86 / 7e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016076 [exp] 268 / 8e-92 AT3G07580 92 / 3e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172600 [exp] 164 / 7e-52 AT3G07580 105 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012299 pacid=23176821 polypeptide=Lus10012299 locus=Lus10012299.g ID=Lus10012299.BGIv1.0 annot-version=v1.0 ATGCTGGAAAACCCTACCCCTGCACCTCCTTCAGACCCTTCTGTCAAGCGATACGCTCCTCCCAATCAAAGGCTCGTCCTTTTCACTCTTTACCGATTCA GCTCTTTACTTCAAATTGATAGAATTGATCGCTTTGGCAGTCTATATGCAAATGATGGAGACAGAAGCCAAACGCATTCCTCTTCAAGAAGTATCCCTGG CATAGATCATGGAGATGCTGGAATCCAAAACCTTCAAAATCAGAACTCGCGGGTTGCTTTAGTAGCTTTAGAAGGATGCTGTCACAGCGATGCTTCTCAA CTTCTGAATGATCGTTGGGCTTCAGTGATGCATATCTACAATGATCCTGCGATAGATTTATCTGAAAGACCAGTTCTTTATTCTGGCAGTGTATCAGTAT GGGGACAGTTTAAGCTTCCGCATCAGATGATGGCTGCAGCAAACAGTGTAGGACCTTCTGGTGCTCAGATGGATTTTCTAGGTGAACTTCGTCGAGCAAT GTACAATGCCAATGCCAATGCCGGTTCTAACAACTAA
AA sequence Show only first row Show all	>Lus10012299 pacid=23176821 polypeptide=Lus10012299 locus=Lus10012299.g ID=Lus10012299.BGIv1.0 annot-version=v1.0 MLENPTPAPPSDPSVKRYAPPNQRLVLFTLYRFSSLLQIDRIDRFGSLYANDGDRSQTHSSSRSIPGIDHGDAGIQNLQNQNSRVALVALEGCCHSDASQ LLNDRWASVMHIYNDPAIDLSERPVLYSGSVSVWGQFKLPHQMMAAANSVGPSGAQMDFLGELRRAMYNANANAGSNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07580			unknown protein		Lus10012299 [exp]	0	1
AT3G12300			unknown protein		Lus10005383 [exp]	3.5	0.9422
AT3G07580			unknown protein		Lus10016076 [exp]	3.5	0.9512
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	5.8	0.9457
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	8.4	0.9330
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	9.7	0.9351
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	14.1	0.9236
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	14.5	0.9342
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	16.1	0.9384
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	22.0	0.9231
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	23.4	0.9270

Compare expression of checked genes

Lus10012299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.